Browse Element(s) Details


Os.7902.1.S1_at

Description gb:AK111852.1
DB_XREF= gi:37988515
TID=Os.7902.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.7902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033005P22, full insert sequence.
FL= gb:AK112082.1 gb:AK111897.1 gb:AK111852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4695011/11EF-hand Ca2+-binding protein CCD1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46890Os.14747.1.S1_at11/116+28456955..28462486expressed protein
LOC_Os06g46900Os.11106.1.S1_at11/116+28462800..28465239phosphosulfolactate synthase-related protein, putative, expressed
LOC_Os06g46910Os.50189.1.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46910Os.50189.2.S1_at11/116+28466986..28470156zinc finger family protein, putative, expressed
LOC_Os06g46920Os.52555.1.S1_at11/116+28469176..28471150NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g46930Os.7589.1.S1_at11/116+28471589..2847378150S ribosomal protein L24, chloroplast precursor, putative, expressed
LOC_Os06g46940Os.49601.1.S1_at9/116+28476209..28479889Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os06g46950Os.7902.1.S1_at11/116+28482814..28483492EF-hand Ca2+-binding protein CCD1, putative, expressed
LOC_Os06g46960NANA6+28486836..28487644RNase H domain-containing protein, putative
LOC_Os06g46970Os.4940.1.S1_at11/116+28489033..28489686expressed protein
LOC_Os06g46980Os.56964.1.S1_at11/116+28492189..28492849expressed protein
LOC_Os06g46990Os.51830.1.S1_at11/116+28494282..28496333expressed protein
LOC_Os06g47000Os.28370.1.A1_s_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47000Os.49375.1.S1_at11/116+28503187..28507810EF hand family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7902.1.S1_at--957--951Chr06:28483003..28483027 (25 bp)
AGGAGCTCGCAAGCGGGTTCCGCCT
LOC_Os06g46950
Os.7902.1.S1_at--1056--8391Chr06:28483158..28483182 (25 bp)
GGCGCCCTCAGCGAGATGGAGTTCT
LOC_Os06g46950
Os.7902.1.S1_at--1118--4291Chr06:28483258..28483282 (25 bp)
CCTCACAGTTCCTCTTTCATTAGAA
LOC_Os06g46950
Os.7902.1.S1_at--106--5671Chr06:28483288..28483312 (25 bp)
GACATGGATAGGATTCTTCTTCTTT
LOC_Os06g46950
Os.7902.1.S1_at--409--9571Chr06:28483324..28483348 (25 bp)
TCTTCTTTCTTCTCGTTGTTCATAG
LOC_Os06g46950
Os.7902.1.S1_at--1050--4031Chr06:28483337..28483361 (25 bp)
CGTTGTTCATAGCATCAGGATTCAT
LOC_Os06g46950
Os.7902.1.S1_at--126--1011Chr06:28483353..28483377 (25 bp)
AGGATTCATCAAGGGCACTGCTCAT
LOC_Os06g46950
Os.7902.1.S1_at--79--5111Chr06:28483367..28483391 (25 bp)
GCACTGCTCATTGGTTCGCGGATTC
LOC_Os06g46950
Os.7902.1.S1_at--178--6591Chr06:28483387..28483411 (25 bp)
GATTCCAATCGCATTTGTACTCTCA
LOC_Os06g46950
Os.7902.1.S1_at--560--8751Chr06:28483402..28483426 (25 bp)
TGTACTCTCATGTACTACACTCTGC
LOC_Os06g46950
Os.7902.1.S1_at--485--4931Chr06:28483425..28483449 (25 bp)
GCTTGTTTCTTCGTTCCAAGTGGAA
LOC_Os06g46950
Target Sequence 
AGGAGCTCGCAAGCGGGTTCCGCCTGCTCATGGACCCGGCCTCCGGGCTCATCACCTTCGACAGCCTCCGCCGCAACGCG
CCGCTGCTCGGCCTCGGCGGGATGTCCGACGACGACCTCCGGGGGATGCTCGCCGAGGGCGACTTCGACGGCGACGGCGC
CCTCAGCGAGATGGAGTTCTGCGTCCTCATGGTCAGGCTCAGCCCCGACCTCATGGACGAGCCTCGCCGGTGGCTCGACG
ACGCCGTCGCCCAGGCCTCACAGTTCCTCTTTCATTAGAAAGTTCGACATGGATAGGATTCTTCTTCTTTTTTTCTTTCT
TTCTTCTTTCTTCTCGTTGTTCATAGCATCAGGATTCATCAAGGGCACTGCTCATTGGTTCGCGGATTCCAATCGCATTT
GTACTCTCATGTACTACACTCTGCTTGTTTCTTCGTTCCAAGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis