Browse Element(s) Details


Os.7928.1.S1_at

Description gb:AK069854.1
DB_XREF= gi:32979878
TID=Os.7928.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013033E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036P10, full insert sequence.
FL= gb:AK069854.1 gb:AK099549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4897011/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48940Os.50932.1.S1_at10/113+27810937..27821033Chloride channel protein CLC-d, putative, expressed
LOC_Os03g48950Os.56231.1.S1_at11/113+27827117..27831535expressed protein
LOC_Os03g48960NANA3+27832590..27832952hypothetical protein
LOC_Os03g48970Os.7928.1.S1_at11/113+27839564..27843641CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g48980NANA3+27845557..27847083transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48990Os.45173.1.S1_x_at2/113+27848372..27856619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49000OsAffx.9609.1.S1_at1/113+27858773..27864179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49000OsAffx.12972.1.S1_at1/113+27858773..27864179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49010OsAffx.13419.1.S1_at10/113+27867861..27868892hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7928.1.S1_at--81--6971Chr03:27843087..27843111 (25 bp)
GTAGCGGCTCGAAACCTAGAACAGT
LOC_Os03g48970
Os.7928.1.S1_at--874--1771Chr03:27843123..27843147 (25 bp)
ACCGGCATTCACTCTTGAGGGTGGA
LOC_Os03g48970
Os.7928.1.S1_at--256--5211Chr03:27843159..27843183 (25 bp)
GAATTGTGCTGCCATCTTTCAAATG
LOC_Os03g48970
Os.7928.1.S1_at--480--91Chr03:27843214..27843238 (25 bp)
ATTCCTCTGAATGATCTATGCACCA
LOC_Os03g48970
Os.7928.1.S1_at--703--651Chr03:27843231..27843255 (25 bp)
ATGCACCAATTGTTGATCCTGGCAG
LOC_Os03g48970
Os.7928.1.S1_at--443--6871Chr03:27843271..27843295 (25 bp)
GTATTGAGTCCATCACAGTGCGAAT
LOC_Os03g48970
Os.7928.1.S1_at--1147--7091Chr03:27843296..27843320 (25 bp)
GTCACGGGTAGATCTGCTGTTTTCA
LOC_Os03g48970
Os.7928.1.S1_at--1005--5191Chr03:27843322..27843346 (25 bp)
GCAATTCATTCTTGGCTTTCTATCC
LOC_Os03g48970
Os.7928.1.S1_at--446--9311Chr03:27843344..27843368 (25 bp)
TCCCACCCGTTGTTGTTGCAAGTTA
LOC_Os03g48970
Os.7928.1.S1_at--486--5031Chr03:27843374..27843398 (25 bp)
GCAGTACTTGTCTCAGTGTCCGTGA
LOC_Os03g48970
Os.7928.1.S1_at--144--9211Chr03:27843573..27843597 (25 bp)
TGCCACTCGTTGCTTTGCTGTATGT
LOC_Os03g48970
Target Sequence 
GTAGCGGCTCGAAACCTAGAACAGTGGCTTCTGTCCACCGGCATTCACTCTTGAGGGTGGATTCTTGCTCCAGAATTGTG
CTGCCATCTTTCAAATGATNTTCATCGTGCAAAGTAATTATATGTACATTCCTCTGAATGATCTATGCACCAATTGTTGA
TCCTGGCAGGGTAATAATCTGGATGTATTGAGTCCATCACAGTGCGAATGTCACGGGTAGATCTGCTGTTTTCAGGCAAT
TCATTCTTGGCTTTCTATCCCACCCGTTGTTGTTGCAAGTTAAGCTAGCAGTACTTGTCTCAGTGTCCGTGAGACGTTTG
TGTAAGATTAGGTTAAACTAGAAGTTGTAATGCTGTATTAAGTGTTTGTATTTCTAATATGAACCGTAACAAGGCCAGAG
CAGAACTCGTTATACATACAAAAATTGATGGCCAGGTCAGTGTTNCNGTATTATTATGCAANGGCAGAAGCTTGCATAAG
GCGTGGTGCCACTCGTTGCTTTGCTGTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis