Browse Element(s) Details


OsAffx.13419.1.S1_at

Description tigr:9631.m04776
TID=OsAffx.13419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4901010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48970Os.7928.1.S1_at11/113+27839564..27843641CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g48980NANA3+27845557..27847083transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g48990Os.45173.1.S1_x_at2/113+27848372..27856619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49000OsAffx.9609.1.S1_at1/113+27858773..27864179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49000OsAffx.12972.1.S1_at1/113+27858773..27864179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49010OsAffx.13419.1.S1_at10/113+27867861..27868892hypothetical protein
LOC_Os03g49020OsAffx.25632.1.S1_at10/113+27872907..27875814hypothetical protein
LOC_Os03g49020Os.23133.1.S1_at1/113+27872907..27875814hypothetical protein
LOC_Os03g49030Os.46314.3.S1_at4/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.7362.1.S1_x_at2/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.265.1.S1_at1/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.1.S1_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.2.S1_s_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49050OsAffx.25633.1.S1_at10/113+27892585..27898122Lysine Decarboxylase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13419.1.S1_at--62--7911Chr03:27867891..27867915 (25 bp)
GGTTCGCAGGCTGGTCGTGCACACA
LOC_Os03g49010
OsAffx.13419.1.S1_at--437--5011Chr03:27867896..27867920 (25 bp)
GCAGGCTGGTCGTGCACACACGCAG
LOC_Os03g49010
OsAffx.13419.1.S1_at--470--1391Chr03:27867919..27867943 (25 bp)
AGCCCGGTCTTACCATTGGCCGTGG
LOC_Os03g49010
OsAffx.13419.1.S1_at--154--10451Chr03:27867928..27868081 (25 bp)
TTACCATTGGCCGTGGGTTCCGCAC
LOC_Os03g49010
OsAffx.13419.1.S1_at--1111--4351Chr03:27868086..27868110 (25 bp)
CCACCTGACGTGTTTGCTGGCGTTG
LOC_Os03g49010
OsAffx.13419.1.S1_at--816--5751Chr03:27868092..27868116 (25 bp)
GACGTGTTTGCTGGCGTTGGCACAT
LOC_Os03g49010
OsAffx.13419.1.S1_at--1124--8231Chr03:27868110..27868134 (25 bp)
GGCACATCGGCGCATGGTTTGCATA
LOC_Os03g49010
OsAffx.13419.1.S1_at--687--9451Chr03:27868116..27868139 (24 bp)
TCGGCGCATGGTTTGCATAGGGCTT
LOC_Os03g49010
OsAffx.13419.1.S1_at--1100--4111Chr03:27868120..27868139 (20 bp)
CGCATGGTTTGCATAGGGCTTGGAA
LOC_Os03g49010
OsAffx.13419.1.S1_at--944--9051NONE
TGCATAGGGCTTGGAAGTCCGAGCA
NONE
OsAffx.13419.1.S1_at--801--2851Chr03:27868827..27868851 (25 bp)
AAGTCCGAGCAGGAAGCATCGCTGG
LOC_Os03g49010
Target Sequence 
GGTTCGCAGGCTGGTCGTGCACACACGCAGCCCGGTCTTACCATTGGCCGTGGGTTCCGCACTTCCCCACCTGACGTGTT
TGCTGGCGTTGGCACATCGGCGCATGGTTTGCATAGGGCTTGGAAGTCCGAGCAGGAAGCATCGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis