Browse Element(s) Details


Os.23133.1.S1_at

Description gb:CA998247
DB_XREF= gi:27554347
DB_XREF=S234E_C05
TID=Os.23133.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23133 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g490201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48990Os.45173.1.S1_x_at2/113+27848372..27856619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49000OsAffx.9609.1.S1_at1/113+27858773..27864179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49000OsAffx.12972.1.S1_at1/113+27858773..27864179transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49010OsAffx.13419.1.S1_at10/113+27867861..27868892hypothetical protein
LOC_Os03g49020OsAffx.25632.1.S1_at10/113+27872907..27875814hypothetical protein
LOC_Os03g49020Os.23133.1.S1_at1/113+27872907..27875814hypothetical protein
LOC_Os03g49030Os.46314.3.S1_at4/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.7362.1.S1_x_at2/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.265.1.S1_at1/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.1.S1_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.2.S1_s_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49050OsAffx.25633.1.S1_at10/113+27892585..27898122Lysine Decarboxylase, putative
LOC_Os03g49060NANA3+27900294..27901151retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23133.1.S1_at--660--6011Chr07:595235..595259 (25 bp)
GAGAGTGCCTTCAAAACTCTTTTAT
NONE
Os.23133.1.S1_at--494--2012Chr07:595220..595244 (25 bp)
ACTCTTTTATCCTATGTGTCATCCT
NONE
Os.23133.1.S1_at--340--10151Chr07:595213..595237 (25 bp)
TATCCTATGTGTCATCCTATGGTAA
NONE
Os.23133.1.S1_at--176--4291Chr07:595198..595222 (25 bp)
CCTATGGTAATTCTTTTGCTTTTTG
NONE
Os.23133.1.S1_at--669--10111Chr07:595173..595197 (25 bp)
TATGGTATGTTTGTGCTGAGTCAGC
NONE
Os.23133.1.S1_at--664--8891Chr07:595157..595181 (25 bp)
TGAGTCAGCAGCTTTGTTGCCGGTG
NONE
Os.23133.1.S1_at--793--10771Chr07:595144..595168 (25 bp)
TTGTTGCCGGTGTCGTTGGCTAAGA
NONE
Os.23133.1.S1_at--673--7451Chr07:595135..595159 (25 bp)
GTGTCGTTGGCTAAGAACTTGATAT
NONE
Os.23133.1.S1_at--695--3614Chr06:7114545..7115030 (25 bp)
CTTGATATGTAAGCTGGAATCCCCA
NONE
Os.23133.1.S1_at--527--5251Chr07:595102..595126 (25 bp)
GAATCCCCAGCCTTATTTCTGTACA
NONE
Os.23133.1.S1_at--463--10611Chr07:595086..595110 (25 bp)
TTCTGTACACAGACTTCTTATGCTT
NONE
Target Sequence 
GAGAGTGCCTTCAAAACTCTTTTATCCTATGTGTCATCCTATGGTAATTCTTTTGCTTTTTGTATGGTATGTTTGTGCTG
AGTCAGCAGCTTTGTTGCCGGTGTCGTTGGCTAAGAACTTGATATGTAAGCTGGAATCCCCAGCCTTATTTCTGTACACA
GACTTCTTATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis