Browse Element(s) Details


OsAffx.25633.1.S1_at

Description tigr:9631.m04780
TID=OsAffx.25633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative decarboxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4905010/11Lysine Decarboxylase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49010OsAffx.13419.1.S1_at10/113+27867861..27868892hypothetical protein
LOC_Os03g49020OsAffx.25632.1.S1_at10/113+27872907..27875814hypothetical protein
LOC_Os03g49020Os.23133.1.S1_at1/113+27872907..27875814hypothetical protein
LOC_Os03g49030Os.46314.3.S1_at4/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.7362.1.S1_x_at2/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.265.1.S1_at1/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.1.S1_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.2.S1_s_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49050OsAffx.25633.1.S1_at10/113+27892585..27898122Lysine Decarboxylase, putative
LOC_Os03g49060NANA3+27900294..27901151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49070OsAffx.13420.1.S1_at11/113+27904914..27907839hypothetical protein
LOC_Os03g49080NANA3+27909425..27909919hypothetical protein
LOC_Os03g49090Os.24942.4.A1_x_at3/113+27913837..27916586hypothetical protein
LOC_Os03g49090Os.24942.4.A1_at3/113+27913837..27916586hypothetical protein
LOC_Os03g49100NANA3+27918211..27920730retrotransposon protein, putative, unclassified
LOC_Os03g49110OsAffx.21249.1.S1_at1/113+27921890..27923629hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25633.1.S1_at--562--3771Chr03:27892706..27892730 (25 bp)
CTCTCGACCTCGGAAAGCAGCTGGT
LOC_Os03g49050
OsAffx.25633.1.S1_at--83--1131NONE
AGTGCTCTCCTACCTGAAGAGGTGT
NONE
OsAffx.25633.1.S1_at--892--2311Chr03:27893387..27893411 (25 bp)
AAAGTGGTCAGGGACATGCATGAGC
LOC_Os03g49050
OsAffx.25633.1.S1_at--164--3531Chr03:27893401..27893425 (25 bp)
CATGCATGAGCGCAAGTCAGAAATG
LOC_Os03g49050
OsAffx.25633.1.S1_at--84--2291Chr03:27893421..27893445 (25 bp)
AAATGGCGAAACACGCCGACGCTTT
LOC_Os03g49050
OsAffx.25633.1.S1_at--560--4531Chr03:27893450..27893665 (25 bp)
GCCCTGCCAGGTGGTTACGGGACAA
LOC_Os03g49050
OsAffx.25633.1.S1_at--928--6751Chr03:27893654..27893678 (25 bp)
GTTACGGGACAATCGAAGAACTGTT
LOC_Os03g49050
OsAffx.25633.1.S1_at--1050--2551Chr03:27893672..27893696 (25 bp)
AACTGTTGGAGATCATAGCGTGGGC
LOC_Os03g49050
OsAffx.25633.1.S1_at--886--2191Chr03:27894015..27894039 (25 bp)
ACAACAACTTACTCTCGCTGTTCGA
LOC_Os03g49050
OsAffx.25633.1.S1_at--1042--4471Chr03:27894104..27894128 (25 bp)
GCCGGCGAACTACTGACCAAGCTGA
LOC_Os03g49050
OsAffx.25633.1.S1_at--785--2011Chr03:27894112..27894136 (25 bp)
ACTACTGACCAAGCTGACGGAGGCG
LOC_Os03g49050
Target Sequence 
CTCTCGACCTCGGAAAGCAGCTGGTCGAGAGGGAGCTCGATCTGGTCTACGGCGGCGGCAGCGGCGGCCTGATGGGCCTC
GTCTCCAAGACCGTCCACGACGGCGGCCGCCACGTCCTCGGGGTCATCCCTAGTGCTCTCCTACCTGAAGAGGTGTCAGG
GGAGACGTTGGGAGAGGCGAAAGTGGTCAGGGACATGCATGAGCGCAAGTCAGAAATGGCGAAACACGCCGACGCTTTCA
TCGCCCTGCCAGGTGGTTACGGGACAATCGAAGAACTGTTGGAGATCATAGCGTGGGCGCAGCTGGGGATCCACAACAAA
CCGGTGGGGCTGCTCAATGTGGACGGCTACTACAACAACTTACTCTCGCTGTTCGACAAGGGCGTCGAGGAAGGGTTCAT
CGACGCCGCGGCGCGGAACATCTTCGTCCTCGCCGACAACGCCGGCGAACTACTGACCAAGCTGACGGAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis