Browse Element(s) Details


OsAffx.13420.1.S1_at

Description tigr:9631.m04782
TID=OsAffx.13420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4907011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49030Os.46314.3.S1_at4/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.7362.1.S1_x_at2/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49030OsAffx.265.1.S1_at1/113+27881196..27884543transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.1.S1_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49040OsAffx.23366.2.S1_s_at1/113+27886188..27889768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g49050OsAffx.25633.1.S1_at10/113+27892585..27898122Lysine Decarboxylase, putative
LOC_Os03g49060NANA3+27900294..27901151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49070OsAffx.13420.1.S1_at11/113+27904914..27907839hypothetical protein
LOC_Os03g49080NANA3+27909425..27909919hypothetical protein
LOC_Os03g49090Os.24942.4.A1_x_at3/113+27913837..27916586hypothetical protein
LOC_Os03g49090Os.24942.4.A1_at3/113+27913837..27916586hypothetical protein
LOC_Os03g49100NANA3+27918211..27920730retrotransposon protein, putative, unclassified
LOC_Os03g49110OsAffx.21249.1.S1_at1/113+27921890..27923629hypothetical protein
LOC_Os03g49120Os.14919.1.S1_at6/113+27925177..27931137transposon protein, putative, Mutator sub-class
LOC_Os03g49120Os.56216.1.S1_at2/113+27925177..27931137transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13420.1.S1_at--440--8851Chr03:27906600..27906624 (25 bp)
TGATCTTCATGTTATCTGCGGCTTG
LOC_Os03g49070
OsAffx.13420.1.S1_at--486--3831Chr03:27906615..27906639 (25 bp)
CTGCGGCTTGAATCCATATGTTATC
LOC_Os03g49070
OsAffx.13420.1.S1_at--445--10171Chr03:27906636..27906660 (25 bp)
TATCAAGTCTGGTGTTTCTCCTCTC
LOC_Os03g49070
OsAffx.13420.1.S1_at--1088--6831Chr03:27906649..27906673 (25 bp)
GTTTCTCCTCTCCATTATGGTGATA
LOC_Os03g49070
OsAffx.13420.1.S1_at--939--271Chr03:27906671..27906695 (25 bp)
ATAGTTCATGCAAGATCCGGTACAA
LOC_Os03g49070
OsAffx.13420.1.S1_at--585--1791Chr03:27906805..27906829 (25 bp)
ACCGATGAACCATTGTGCTGGCCAA
LOC_Os03g49070
OsAffx.13420.1.S1_at--359--9131Chr03:27906820..27906844 (25 bp)
TGCTGGCCAATCATGGGACATCCTG
LOC_Os03g49070
OsAffx.13420.1.S1_at--125--3911Chr03:27907564..27907586 (23 bp)
CTGGTCGTTGTTTCCATTGCGAATA
LOC_Os03g49070
OsAffx.13420.1.S1_at--483--371Chr03:27907625..27907649 (25 bp)
ATCACGGCCGTGACATTGACTTTGA
LOC_Os03g49070
OsAffx.13420.1.S1_at--861--7111Chr03:27907699..27907723 (25 bp)
GTCAGTTCTGGCGAGAGTGTCACTT
LOC_Os03g49070
OsAffx.13420.1.S1_at--419--7291Chr03:27907782..27907806 (25 bp)
GTGCGCAAATTTCTTGAATGCCCAT
LOC_Os03g49070
Target Sequence 
TGATCTTCATGTTATCTGCGGCTTGAATCCATATGTTATCAAGTCTGGTGTTTCTCCTCTCCATTATGGTGATAGTTCAT
GCAAGATCCGGTACAAATCCAAGTATTCTCATGTCAACTTTTTGGCGAGCCCAAGAGGATCACATTCTTCTGACACAGTA
ATTCCAACACTCTTCTTTGCTGAGTGTTGCAACGACAATGATATAACCGATGAACCATTGTGCTGGCCAATCATGGGACA
TCCTGGTCGTTGTTTCCATTGCGAATATGAAGGTGTGAAGGTTGTGCATCCTGAAAGCCAGAAATATCACGGCCGTGACA
TTGACTTTGAGGAAATGGCGTGTAAAAGCCATTCAAATGGTATCGTCAATGAAGATTTAGTCAGTTCTGGCGAGAGTGTC
ACTTATTCAGTAGGCATATCACAAGAGGATTGCATCTACTTTGATTTCCGTAGGGATGTAAAGTGCGCAAATTTCTTGAA
TGCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis