Browse Element(s) Details


Os.7946.1.S1_a_at

Description gb:AK059569.1
DB_XREF= gi:32969587
TID=Os.7946.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU033035(S1515),D39871(S1515) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana chromosome II BAC F22D22 genomic sequence; putative glucan synthase (AC006223) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H12, full insert sequence.
FL= gb:AK059569.1 gb:AK071856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0226011/11Callose synthase catalytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02240Os.3702.1.S1_at10/116+698091..701212RNA recognition motif, putative, expressed
LOC_Os06g02250OsAffx.10368.1.S1_at11/116+715820..717015Myb-like DNA-binding domain containing protein
LOC_Os06g02250Os.57514.1.S1_x_at1/116+715820..717015Myb-like DNA-binding domain containing protein
LOC_Os06g02260Os.7946.1.S1_a_at11/116+724042..729614Callose synthase catalytic subunit, putative, expressed
LOC_Os06g02270Os.31468.2.S1_at3/116+749409..749846hypothetical protein
LOC_Os06g02280NANA6+753704..754111hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7946.1.S1_a_at--582--5011Chr06:724830..724854 (25 bp)
GCAGGAATTGCTCTACTTATTGCAT
LOC_Os06g02260
Os.7946.1.S1_a_at--189--3911Chr06:724756..724775 (20 bp)
CTGGATGGTGTGTTCTATGTCTGGC
LOC_Os06g02260
Os.7946.1.S1_a_at--1069--751Chr06:724512..724532 (21 bp)
ATGTCTGGCTGTCACATGGAAGCGC
LOC_Os06g02260
Os.7946.1.S1_a_at--915--831Chr06:724497..724521 (25 bp)
ATGGAAGCGCCTCGTGAAATTCGTT
LOC_Os06g02260
Os.7946.1.S1_a_at--961--3131Chr06:724480..724504 (25 bp)
AATTCGTTGGGCTCTGGGACTCAGT
LOC_Os06g02260
Os.7946.1.S1_a_at--608--5711Chr06:724463..724487 (25 bp)
GACTCAGTCCGTGAGATTGCTCGGA
LOC_Os06g02260
Os.7946.1.S1_a_at--249--5291Chr06:724426..724450 (25 bp)
GAATGGGTGCTCTCATCTTTGTGCC
LOC_Os06g02260
Os.7946.1.S1_a_at--712--10251Chr06:724409..724433 (25 bp)
TTTGTGCCCATTGTGTTCTTTTCAT
LOC_Os06g02260
Os.7946.1.S1_a_at--925--1151Chr06:724360..724384 (25 bp)
AGTCACGTTTCCTGTTTAATCAAGC
LOC_Os06g02260
Os.7946.1.S1_a_at--211--2711Chr06:724339..724363 (25 bp)
AAGCTTTCAGCCGTGGTCTGGAGAT
LOC_Os06g02260
Os.7946.1.S1_a_at--426--471Chr06:724316..724340 (25 bp)
ATCTCCCTCATCTTGGCAGGAAACA
LOC_Os06g02260
Target Sequence 
GCAGGAATTGCTCTACTTATTGCATTGACAAAGTTTACAATTGCTGATCTATTTGCAAGTGCGCTTGCTTTTGTAGCAAC
TGGATGGTGTGTTCTATGTCTGGCTGTCACATGGAAGCGCCTCGTGAAATTCGTTGGGCTCTGGGACTCAGTCCGTGAGA
TTGCTCGGATGTATGATGCCGGAATGGGTGCTCTCATCTTTGTGCCCATTGTGTTCTTTTCATGGTTCCCCTTCGTATCC
ACCTTCNCAGTCACGTTTCCTGTTTAATCAAGCTTTCAGCCGTGGTCTGGAGATCTCCCTCATCTTGGCAGGAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7946.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis