Browse Element(s) Details


Os.7962.1.S1_a_at

Description gb:U86018.1
DB_XREF= gi:1835730
TID=Os.7962.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7962 (NCBI UniGene Cluster)
DEF=Oryza sativa photosystem II 10 kDa polypeptide mRNA, complete cds.
PROD=photosystem II 10 kDa polypeptide
FL= gb:U86018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1002010/11Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10010Os.5295.1.S1_at11/118+5781253..5782786Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g10020Os.7962.1.S1_a_at10/118+5800116..5802114Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os08g10030Os.15367.1.S1_at11/118+5804771..5809684KH domain containing protein, expressed
LOC_Os08g10040Os.47130.4.A1_x_at1/118+5816922..5817254retrotransposon protein, putative, unclassified
LOC_Os08g10050OsAffx.20027.1.S1_at1/118+5819517..5822461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10060NANA8+5822778..5828876retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009523cellular_componentphotosystem II
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7962.1.S1_a_at--891--4351Chr08:5801635..5801784 (25 bp)
GACCGACAAGCCCTACGGGATTGGA
LOC_Os08g10020
Os.7962.1.S1_a_at--213--7451Chr08:5801313..5801337 (25 bp)
GTGTGTACCAATTCGTTGACAAGTA
LOC_Os08g10020
Os.7962.1.S1_a_at--250--9851NONE
TACAGCCCAATCTACTCGCCGGAGG
NONE
Os.7962.1.S1_a_at--633--6191Chr08:5801135..5801159 (25 bp)
GAGGAATGGTCTCCCACCGGTGACA
LOC_Os08g10020
Os.7962.1.S1_a_at--564--5431Chr08:5800427..5800451 (25 bp)
GAACCACCGGGCTTCTGATCTGGGC
LOC_Os08g10020
Os.7962.1.S1_a_at--993--9671Chr08:5800329..5800353 (25 bp)
TCACCCAAATCCAGTCTATGTATGT
LOC_Os08g10020
Os.7962.1.S1_a_at--256--1711Chr08:5800301..5800325 (25 bp)
ACCAAGCTGGGTGTCTGCATATTCA
LOC_Os08g10020
Os.7962.1.S1_a_at--789--7711Chr08:5800293..5800317 (25 bp)
GGGTGTCTGCATATTCATCTGTAAT
LOC_Os08g10020
Os.7962.1.S1_a_at--368--7071Chr08:5800273..5800297 (25 bp)
GTAATCTAAGATAGCCTTCCTCTGA
LOC_Os08g10020
Os.7962.1.S1_a_at--695--9991Chr08:5800262..5800286 (25 bp)
TAGCCTTCCTCTGAATGCGATGTGA
LOC_Os08g10020
Os.7962.1.S1_a_at--637--6351Chr08:5800236..5800260 (25 bp)
GATGCCCACTGCTTAATCAAACTGC
LOC_Os08g10020
Target Sequence 
GACCGACAAGCCCTACGGGATTGGAGGTGGCATGTCAGTCGATATTGATGCATCTGGCAGGAAGAGCACGGGGAAGGGTG
TGTACCAATTCGTTGACAAGTACGGCGCAAACGTCGACGGCTACAGCCCAATCTACTCGCCGGAGGAATGGTCTCCCACC
GGTGACACCTACGTTGGTGGAACCACCGGGCTTCTGATCTGGGCCGTGACCCTCGCCGGGCTCCTCGGCGGCGGCGCCCT
CCTCGTCTACAACACCAGCGCCCTCGCCGGCTAAATTTCACCCAAATCCAGTCTATGTATGTAACACCAAGCTGGGTGTC
TGCATATTCATCTGTAATCTAAGATAGCCTTCCTCTGAATGCGATGTGATGATGCCCACTGCTTAATCAAACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7962.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis