Browse Element(s) Details


Os.15367.1.S1_at

Description gb:AK067859.1
DB_XREF= gi:32977877
TID=Os.15367.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122M06, full insert sequence.
FL= gb:AK067859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1003011/11KH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10010Os.5295.1.S1_at11/118+5781253..5782786Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g10020Os.7962.1.S1_a_at10/118+5800116..5802114Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os08g10030Os.15367.1.S1_at11/118+5804771..5809684KH domain containing protein, expressed
LOC_Os08g10040Os.47130.4.A1_x_at1/118+5816922..5817254retrotransposon protein, putative, unclassified
LOC_Os08g10050OsAffx.20027.1.S1_at1/118+5819517..5822461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10060NANA8+5822778..5828876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10070Os.27059.1.S1_at11/118+5833956..5837579Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15367.1.S1_at--136--2451Chr08:5805293..5805317 (25 bp)
AAAATCGTCTCGTCATGGCCATGTT
LOC_Os08g10030
Os.15367.1.S1_at--810--8131Chr08:5805165..5805189 (25 bp)
GGACACTTCAATCTGTTCCTTTCAA
LOC_Os08g10030
Os.15367.1.S1_at--1069--1791Chr08:5805090..5805114 (25 bp)
ACCCGTCCACACAAGTTTCGATGAA
LOC_Os08g10030
Os.15367.1.S1_at--100--631Chr08:5805061..5805085 (25 bp)
ATGCTTATCCAAGTGTGTTCCCAGG
LOC_Os08g10030
Os.15367.1.S1_at--308--1551Chr08:5805028..5805052 (25 bp)
AGCATTCTATGTTCCTTAGGTTCTC
LOC_Os08g10030
Os.15367.1.S1_at--92--1751Chr08:5805002..5805026 (25 bp)
ACCTTGACCTATTTGTGTTGCCTTG
LOC_Os08g10030
Os.15367.1.S1_at--442--8211Chr08:5804965..5804989 (25 bp)
GGCATGTTCAAATATACCCGGTTAA
LOC_Os08g10030
Os.15367.1.S1_at--1022--10111Chr08:5804892..5804916 (25 bp)
TATGATTGTGTCCTTTCAGCAGTGA
LOC_Os08g10030
Os.15367.1.S1_at--431--6571Chr08:5804862..5804886 (25 bp)
GATTCATTCAGTTGTTACCACAGGG
LOC_Os08g10030
Os.15367.1.S1_at--462--10571Chr08:5804828..5804852 (25 bp)
TTCTTTCTAACTACTCTGCTGCAGA
LOC_Os08g10030
Os.15367.1.S1_at--79--3291Chr08:5804783..5804807 (25 bp)
CAAATGCAGTATGTCCCTATGGTGG
LOC_Os08g10030
Target Sequence 
AAAATCGTCTCGTCATGGCCATGTTGCTCGCATATCTGGCACCACTGAACAGAAGCAATCGGCAGAGAATTTGATCAAAG
CTTTCATTATGTCTACTTAAGGTTCCTGTTATAGTTTTCAATATAGCTGGACACTTCAATCTGTTCCTTTCAACTTCTCG
TGCCATCCCATAATTTCCTTGGGTCCAGGAAAGAGCATCAAATACCCGTCCACACAAGTTTCGATGAATCTCATGCTTAT
CCAAGTGTGTTCCCAGGGTGAACCTAGCATTCTATGTTCCTTAGGTTCTCAACCTTGACCTATTTGTGTTGCCTTGTCCA
TCTTATTTGGCATGTTCAAATATACCCGGTTAATCTCAAATGATTCTCAAATGNTTAGTTCAATCTCATCGTGGTTTAAC
TTATGATTGTGTCCTTTCAGCAGTGATAGCTGATTCATTCAGTTGTTACCACAGGGGAAGAACTCTTCTTTCTAACTACT
CTGCTGCAGAGCCTAAGCTTCCTTTCTTTTCAAATGCAGTATGTCCCTATGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis