Browse Element(s) Details


Os.27059.1.S1_at

Description gb:AK063275.1
DB_XREF= gi:32973293
TID=Os.27059.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C04, full insert sequence.
FL= gb:AK063275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1007011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10030Os.15367.1.S1_at11/118+5804771..5809684KH domain containing protein, expressed
LOC_Os08g10040Os.47130.4.A1_x_at1/118+5816922..5817254retrotransposon protein, putative, unclassified
LOC_Os08g10050OsAffx.20027.1.S1_at1/118+5819517..5822461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10060NANA8+5822778..5828876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10070Os.27059.1.S1_at11/118+5833956..5837579Protein kinase domain containing protein, expressed
LOC_Os08g10080Os.26957.1.A1_a_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10080OsAffx.16932.1.S1_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10090OsAffx.29128.1.S1_at11/118+5852056..5853214hypothetical protein
LOC_Os08g10100NANA8+5858945..5859496hypothetical protein
LOC_Os08g10110OsAffx.29130.1.S1_at8/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.20929.1.S1_at2/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.1472.1.S1_at1/118+5861115..5862621hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27059.1.S1_at--635--7691Chr08:5836571..5836595 (25 bp)
GGGTACCTAGCTCCTGAATATGCAC
LOC_Os08g10070
Os.27059.1.S1_at--1025--2131Chr08:5836629..5836653 (25 bp)
ACAGTTTCGGTGTTTTGATCTTGGA
LOC_Os08g10070
Os.27059.1.S1_at--896--4971Chr08:5836907..5836931 (25 bp)
GCATGCCGGTTCTTGAAGGTTGGAC
LOC_Os08g10070
Os.27059.1.S1_at--683--5311Chr08:5836921..5836945 (25 bp)
GAAGGTTGGACTACTATGCACTCAA
LOC_Os08g10070
Os.27059.1.S1_at--497--2791Chr08:5836944..5836968 (25 bp)
AAGATGCGATGAAACTCCGTCCCAA
LOC_Os08g10070
Os.27059.1.S1_at--391--7231Chr08:5836962..5836986 (25 bp)
GTCCCAACATGATCAACATCGTCCA
LOC_Os08g10070
Os.27059.1.S1_at--367--2671Chr08:5837030..5837054 (25 bp)
AAGCCCTCTGTTGTTGGTGACCTGG
LOC_Os08g10070
Os.27059.1.S1_at--300--9991Chr08:5837068..5837092 (25 bp)
TAGCAGCCAGCAGAGACCAATTGAT
LOC_Os08g10070
Os.27059.1.S1_at--791--8851Chr08:5837089..5837113 (25 bp)
TGATCCACAGTCTCTCCTGATGAGA
LOC_Os08g10070
Os.27059.1.S1_at--90--3871Chr08:5837105..5837129 (25 bp)
CTGATGAGATCCTTTGCCACCACTG
LOC_Os08g10070
Os.27059.1.S1_at--171--1411Chr08:5837146..5837170 (25 bp)
AGACACGACTACACGATCATCGCTA
LOC_Os08g10070
Target Sequence 
GGGTACCTAGCTCCTGAATATGCACTCAGAGGACAAGTGACTAAGAAGTCAGATATCTACAGTTTCGGTGTTTTGATCTT
GGAAATTGTCAGCGGCAGATGCAACTATAATTCTAGGTTGCCTTATGAAGAACAATTTCTGCTTGAGAGGACATGGACAT
GTTATGAGCAAGGGCATTTAGAGGAGATCATAGATGCAGATATAGAAGATGATGTGGATGTCGAGGAGGCATGCCGGTTC
TTGAAGGTTGGACTACTATGCACTCAAGATGCGATGAAACTCCGTCCCAACATGATCAACATCGTCCAGATGCTGACCGG
AGAGAAGGATGTCAACACAGAAAGGATCACCAAGCCCTCTGTTGTTGGTGACCTGGGAGACCTGAGAGGTAGCAGCCAGC
AGAGACCAATTGATCCACAGTCTCTCCTGATGAGATCCTTTGCCACCACTGACCCATCCACATCATCAGACACGACTACA
CGATCATCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis