Browse Element(s) Details


Os.26957.1.A1_a_at

Description gb:AK105596.1
DB_XREF= gi:32990805
TID=Os.26957.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.26957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A01, full insert sequence.
FL= gb:AK105596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1008011/11NAC-domain containing protein 21/22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10040Os.47130.4.A1_x_at1/118+5816922..5817254retrotransposon protein, putative, unclassified
LOC_Os08g10050OsAffx.20027.1.S1_at1/118+5819517..5822461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10060NANA8+5822778..5828876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10070Os.27059.1.S1_at11/118+5833956..5837579Protein kinase domain containing protein, expressed
LOC_Os08g10080Os.26957.1.A1_a_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10080OsAffx.16932.1.S1_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10090OsAffx.29128.1.S1_at11/118+5852056..5853214hypothetical protein
LOC_Os08g10100NANA8+5858945..5859496hypothetical protein
LOC_Os08g10110OsAffx.29130.1.S1_at8/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.20929.1.S1_at2/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.1472.1.S1_at1/118+5861115..5862621hypothetical protein
LOC_Os08g10120NANA8+5863499..5867247retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009734biological_processauxin mediated signaling pathway
GO:0010014biological_processmeristem initiation
GO:0010199biological_processorgan boundary specification
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26957.1.A1_a_at--502--4171Chr08:5841063..5841087 (25 bp)
CGCCATCGATGGTCGGGAGCTACGA
LOC_Os08g10080
Os.26957.1.A1_a_at--867--8071Chr08:5841048..5841072 (25 bp)
GGAGCTACGAGCAAGTGTCCTGCTT
LOC_Os08g10080
Os.26957.1.A1_a_at--1159--3931Chr08:5841012..5841036 (25 bp)
CGGCATTGCCAATGAAGGGCTCCAT
LOC_Os08g10080
Os.26957.1.A1_a_at--787--2731Chr08:5840947..5840971 (25 bp)
AAGAAGGCCATCAGGGTACTGCACA
LOC_Os08g10080
Os.26957.1.A1_a_at--703--7691Chr08:5840934..5840958 (25 bp)
GGGTACTGCACAACAGCAACACTGC
LOC_Os08g10080
Os.26957.1.A1_a_at--1106--6111Chr08:5840876..5840900 (25 bp)
GAGTGGCCTGTCACAGATGTGGAAC
LOC_Os08g10080
Os.26957.1.A1_a_at--205--6491Chr08:5840767..5840791 (25 bp)
GATAGCGATTACTACTGAATGCAGT
LOC_Os08g10080
Os.26957.1.A1_a_at--269--1051Chr08:5840722..5840746 (25 bp)
AGGTGACATATTCTTTCCTCTGCTG
LOC_Os08g10080
Os.26957.1.A1_a_at--670--10291Chr08:5840709..5840733 (25 bp)
TTTCCTCTGCTGGAGTAGTAGCTGT
LOC_Os08g10080
Os.26957.1.A1_a_at--1018--6931Chr08:5840695..5840719 (25 bp)
GTAGTAGCTGTGCATACATTTTGTA
LOC_Os08g10080
Os.26957.1.A1_a_at--424--2291Chr08:5840620..5840644 (25 bp)
AAATGGCTTGGTGTAGAATCTGTAC
LOC_Os08g10080
Target Sequence 
CGCCATCGATGGTCGGGAGCTACGAGCAAGTGTCCTGCTTCTCCGGCCTGCCGGCATTGCCAATGAAGGGCTCCATCAGC
TTTGGGGACCTGCTGGCCATGGACACCTCTGCAGAGAAGAAGGCCATCAGGGTACTGCACAACAGCAACACTGCAAAGCT
GGAGCTCTCCCCAGATTGGGGACAGGAGAGTGGCCTGTCACAGATGTGGAACCCCCAATAATGATCTTGATCTTGATATT
GATATTGATATTGATATTGATATTGATATTGATGATGTTTGTGTTGCTACTTGCTAGATAGCGATTACTACTGAATGCAG
TGTGGCAAATAACTTGTAAAGAGGTGACATATTCTTTCCTCTGCTGGAGTAGTAGCTGTGCATACATTTTGTATTTGATT
GGAAAATTTGATTAGGGGTGTGACATACACAGTAGAGTAGTGAAAATGGCTTGGTGTAGAATCTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26957.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis