Browse Element(s) Details


OsAffx.29128.1.S1_at

Description tigr:9636.m00968
TID=OsAffx.29128.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1009011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10060NANA8+5822778..5828876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10070Os.27059.1.S1_at11/118+5833956..5837579Protein kinase domain containing protein, expressed
LOC_Os08g10080Os.26957.1.A1_a_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10080OsAffx.16932.1.S1_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10090OsAffx.29128.1.S1_at11/118+5852056..5853214hypothetical protein
LOC_Os08g10100NANA8+5858945..5859496hypothetical protein
LOC_Os08g10110OsAffx.29130.1.S1_at8/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.20929.1.S1_at2/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.1472.1.S1_at1/118+5861115..5862621hypothetical protein
LOC_Os08g10120NANA8+5863499..5867247retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10130OsAffx.5772.1.S1_at11/118+5872849..5873442SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10130OsAffx.5772.1.S1_s_at11/118+5872849..5873442SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10140OsAffx.382.1.S1_at4/118+5874301..5877234retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29128.1.S1_at--823--8411Chr08:5852188..5852212 (25 bp)
GGCCGCAGCAGGACCTGCAAGCGCT
LOC_Os08g10090
OsAffx.29128.1.S1_at--725--4991Chr08:5852215..5852239 (25 bp)
GCAGGCCACCTCGAGTACTCGGAGT
LOC_Os08g10090
OsAffx.29128.1.S1_at--542--1751Chr08:5852222..5852246 (25 bp)
ACCTCGAGTACTCGGAGTTGGCCGA
LOC_Os08g10090
OsAffx.29128.1.S1_at--751--1232Chr08:5852237..5852261 (25 bp)
AGTTGGCCGAGTCGAGGTCGCCCCA
LOC_Os08g10090
OsAffx.29128.1.S1_at--365--8291Chr08:5852330..5852354 (25 bp)
GGCTTCTAGGATTTTGGAGGGTTCA
LOC_Os08g10090
OsAffx.29128.1.S1_at--369--171Chr08:5852340..5852364 (25 bp)
ATTTTGGAGGGTTCAACTTGCGGTG
LOC_Os08g10090
OsAffx.29128.1.S1_at--106--8771Chr08:5852944..5852968 (25 bp)
TGTATTGGAGTATCGCTTTCATCTG
LOC_Os08g10090
OsAffx.29128.1.S1_at--739--8551Chr08:5852949..5852973 (25 bp)
TGGAGTATCGCTTTCATCTGACATC
LOC_Os08g10090
OsAffx.29128.1.S1_at--490--10151Chr08:5852954..5852978 (25 bp)
TATCGCTTTCATCTGACATCTGCAT
LOC_Os08g10090
OsAffx.29128.1.S1_at--436--4891Chr08:5852958..5852982 (25 bp)
GCTTTCATCTGACATCTGCATTATT
LOC_Os08g10090
OsAffx.29128.1.S1_at--1060--9471Chr08:5852965..5852989 (25 bp)
TCTGACATCTGCATTATTCCAATCG
LOC_Os08g10090
Target Sequence 
GGCCGCAGCAGGACCTGCAAGCGCTGGGCAGGCCACCTCGAGTACTCGGAGTTGGCCGAGTCGAGGTCGCCCCAGGTGAA
GGGGAGCGGGAAGGGCGAGAAGGGTAGTGGCGGCGGCTGGCCTGCAGAGTGGGGCGGCGGGCGGCTTCTAGGATTTTGGA
GGGTTCAACTTGCGGTGGCAAGGGCGAGATGGTGTCGGAGAGGGATGAGATTATATGGGAATAATGGATATGTATTGGAG
TATCGCTTTCATCTGACATCTGCATTATTCCAATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis