Browse Element(s) Details


OsAffx.5772.1.S1_s_at

Description tigr:9636.m00972
TID=OsAffx.5772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1013011/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10090OsAffx.29128.1.S1_at11/118+5852056..5853214hypothetical protein
LOC_Os08g10100NANA8+5858945..5859496hypothetical protein
LOC_Os08g10110OsAffx.29130.1.S1_at8/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.20929.1.S1_at2/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.1472.1.S1_at1/118+5861115..5862621hypothetical protein
LOC_Os08g10120NANA8+5863499..5867247retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10130OsAffx.5772.1.S1_at11/118+5872849..5873442SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10130OsAffx.5772.1.S1_s_at11/118+5872849..5873442SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10140OsAffx.382.1.S1_at4/118+5874301..5877234retrotransposon protein, putative, unclassified
LOC_Os08g10150OsAffx.382.2.A1_at11/118+5878291..5887945SHR5-receptor-like kinase, putative
LOC_Os08g10160NANA8+5888450..5891377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10170NANA8+5891653..5894029retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10180OsAffx.1412.1.S1_at1/118+5894865..5897787retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5772.1.S1_s_at--672--3251Chr08:5872895..5872919 (25 bp)
CAACGCAAGAAGGATGAATGGTGCT
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--416--5291Chr08:5872910..5872934 (25 bp)
GAATGGTGCTGTGCTGCTTCAGATG
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--546--3831Chr08:5872938..5872962 (25 bp)
CTGCTCCTCTTGCTGGCTGCTCGAG
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--917--4291Chr08:5872943..5872967 (25 bp)
CCTCTTGCTGGCTGCTCGAGCTCAG
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--620--7371Chr08:5872980..5873004 (25 bp)
GTGACGCAGGCCAGGACAGATCCAA
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--937--5791Chr08:5872982..5873006 (25 bp)
GACGCAGGCCAGGACAGATCCAAAA
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--418--5011Chr08:5872985..5873009 (25 bp)
GCAGGCCAGGACAGATCCAAAAGAA
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--900--3431Chr08:5872996..5873098 (25 bp)
CAGATCCAAAAGAAGTGGCGGCGCT
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--639--9331Chr08:5873133..5873157 (25 bp)
TCGCCGCTGTGGAAGATGGCCGACG
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--21--4731Chr08:5873276..5873300 (25 bp)
GCTGTAAGCAGCTATCGTCTTTTTT
LOC_Os08g10130
OsAffx.5772.1.S1_s_at--802--4671Chr08:5873309..5873333 (25 bp)
GCGGGGACGACATGAGCATCTAAGA
LOC_Os08g10130
Target Sequence 
CAACGCAAGAAGGATGAATGGTGCTGTGCTGCTTCAGATGCTGCTGCTCCTCTTGCTGGCTGCTCGAGCTCAGCAGCAGC
AGCAGGTGACGCAGGCCAGGACAGATCCAAAAGAAGTGGCGGCGCTGGACGCGATATTGGGGAGATGGGGCAAGACGACG
TCGCCGCTGTGGAAGATGGCCGACGAGCCATGCTACGGCGTCGCCGTCGACGACAGCACCGACCTCGACGGCAACCCCAA
GAACAACCCCGGCATCAAGTGCGACTGCTCCTACATCAACGGCACCGTCTGCCATATCACCCAGCTGTAAGCAGCTATCG
TCTTTTTTTTCTTTTTGCGGGGACGACATGAGCATCTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5772.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis