Browse Element(s) Details


OsAffx.1472.1.S1_at

Description gb:NM_186544.1
DB_XREF= gi:34900173
GEN=OJ1779_B07.30
TID=OsAffx.1472.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1779_B07.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g101101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10070Os.27059.1.S1_at11/118+5833956..5837579Protein kinase domain containing protein, expressed
LOC_Os08g10080Os.26957.1.A1_a_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10080OsAffx.16932.1.S1_at11/118+5840519..5844303NAC-domain containing protein 21/22, putative, expressed
LOC_Os08g10090OsAffx.29128.1.S1_at11/118+5852056..5853214hypothetical protein
LOC_Os08g10100NANA8+5858945..5859496hypothetical protein
LOC_Os08g10110OsAffx.29130.1.S1_at8/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.20929.1.S1_at2/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.1472.1.S1_at1/118+5861115..5862621hypothetical protein
LOC_Os08g10120NANA8+5863499..5867247retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10130OsAffx.5772.1.S1_at11/118+5872849..5873442SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10130OsAffx.5772.1.S1_s_at11/118+5872849..5873442SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10140OsAffx.382.1.S1_at4/118+5874301..5877234retrotransposon protein, putative, unclassified
LOC_Os08g10150OsAffx.382.2.A1_at11/118+5878291..5887945SHR5-receptor-like kinase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1472.1.S1_at--407--2911Chr07:6421263..6421287 (25 bp)
AAGGACGCCGACTGCCATCGTGTTT
NONE
OsAffx.1472.1.S1_at--846--4431Chr07:6421276..6421300 (25 bp)
GCCATCGTGTTTTTGATGTTCTAGA
NONE
OsAffx.1472.1.S1_at--171--6291Chr07:6421299..6421323 (25 bp)
GATGTTAATGTTTTTTATGTCCCTG
NONE
OsAffx.1472.1.S1_at--44--10371Chr07:6421310..6421334 (25 bp)
TTTTTATGTCCCTGAAGTTCACGTG
NONE
OsAffx.1472.1.S1_at--202--5351NONE
GAAGTTCACGTGTTCACAACTGCCT
NONE
OsAffx.1472.1.S1_at--676--10515Chr08:5862289..5862308 (20 bp)
TTCACAACTGCCTCCGTTGATGTTG
LOC_Os08g10110
OsAffx.1472.1.S1_at--695--3971Chr07:6423054..6423078 (25 bp)
CGGTGCGCCTCCATCTCTAGGAGCG
NONE
OsAffx.1472.1.S1_at--541--5391Chr07:6423267..6423291 (25 bp)
GAAGCAGAACCGTAGCAGCACAGCC
NONE
OsAffx.1472.1.S1_at--486--4031Chr07:6423277..6423301 (25 bp)
CGTAGCAGCACAGCCGTGCGCAAGG
NONE
OsAffx.1472.1.S1_at--265--2151NONE
ACACCAGATGGAAACGGCTCCGGCT
NONE
OsAffx.1472.1.S1_at--430--10071Chr07:6423724..6423748 (25 bp)
TAGTGCGCCTCCATCTCTAGGCGCG
NONE
Target Sequence 
AAGGACGCCGACTGCCATCGTGTTTTTGATGTTCTAGATGTTAATGTTTTTTATGTCCCTGAAGTTCACGTGTTCACAAC
TGCCTCCGTTGATGTTGTCGTTCGCAACGGCTCCGGCTCCCGGTGCGCCTCCATCTCTAGGAGCGGCAGCTGCGGTGGCA
CCAGACATGGCGAAGGTGTGGTTCCGGAGGCCCTGCTCGTTCCGATCTCTCGTGCGCGCAAGCGATCAAAAGCGGGGAAG
CAGAACCGTAGCAGCACAGCCGTGCGCAAGGAGGATGAGGAAGAACACCAGATGGAAACGGCTCCGGCTCCTAGTGCGCC
TCCATCTCTAGGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis