Browse Element(s) Details


OsAffx.382.2.A1_at

Description tigr:9636.m00975
TID=OsAffx.382.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1015011/11SHR5-receptor-like kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10100NANA8+5858945..5859496hypothetical protein
LOC_Os08g10110OsAffx.29130.1.S1_at8/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.20929.1.S1_at2/118+5861115..5862621hypothetical protein
LOC_Os08g10110OsAffx.1472.1.S1_at1/118+5861115..5862621hypothetical protein
LOC_Os08g10120NANA8+5863499..5867247retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g10130OsAffx.5772.1.S1_at11/118+5872849..5873442SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10130OsAffx.5772.1.S1_s_at11/118+5872849..5873442SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10140OsAffx.382.1.S1_at4/118+5874301..5877234retrotransposon protein, putative, unclassified
LOC_Os08g10150OsAffx.382.2.A1_at11/118+5878291..5887945SHR5-receptor-like kinase, putative
LOC_Os08g10160NANA8+5888450..5891377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10170NANA8+5891653..5894029retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10180OsAffx.1412.1.S1_at1/118+5894865..5897787retrotransposon protein, putative, unclassified
LOC_Os08g10190Os.46012.2.S1_x_at7/118+5902070..5906235retrotransposon protein, putative, unclassified
LOC_Os08g10190Os.46012.3.S1_x_at6/118+5902070..5906235retrotransposon protein, putative, unclassified
LOC_Os08g10190Os.27088.1.A1_x_at4/118+5902070..5906235retrotransposon protein, putative, unclassified
LOC_Os08g10190Os.54691.1.S1_x_at1/118+5902070..5906235retrotransposon protein, putative, unclassified
LOC_Os08g10200NANA8+5906736..5907683Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.382.2.A1_at--754--1831Chr08:5887234..5887344 (25 bp)
ACGCTAGGTTATCTCGCACCTGAGT
LOC_Os08g10150
OsAffx.382.2.A1_at--1002--3511Chr08:5887349..5887373 (25 bp)
CATGATGGGCCATCTCACGGAGAAA
LOC_Os08g10150
OsAffx.382.2.A1_at--876--5571Chr08:5887457..5887552 (25 bp)
GAAATACCTACTTGGATGGGCATGG
LOC_Os08g10150
OsAffx.382.2.A1_at--501--6151Chr08:5887619..5887643 (25 bp)
GAGGTCATGCGAGTCATCAACGTCA
LOC_Os08g10150
OsAffx.382.2.A1_at--716--371Chr08:5887634..5887658 (25 bp)
ATCAACGTCATTCTTCTTTGCACAA
LOC_Os08g10150
OsAffx.382.2.A1_at--1054--9011Chr08:5887652..5887676 (25 bp)
TGCACAATGGGCTTGCCTCATCAAC
LOC_Os08g10150
OsAffx.382.2.A1_at--807--5571Chr08:5887690..5887714 (25 bp)
GAAAGTCGTGTCCATTCTTACAGAA
LOC_Os08g10150
OsAffx.382.2.A1_at--36--2291Chr08:5887741..5887765 (25 bp)
AAATGCGAGGCCTAGCTATATCCCT
LOC_Os08g10150
OsAffx.382.2.A1_at--951--251Chr08:5887758..5887782 (25 bp)
ATATCCCTCAGTCGCAGATCAGGAG
LOC_Os08g10150
OsAffx.382.2.A1_at--1009--851Chr08:5887791..5887815 (25 bp)
ATGGCTTCATAGCAGGCTACTTCTC
LOC_Os08g10150
OsAffx.382.2.A1_at--236--3071Chr08:5887833..5887857 (25 bp)
AATCTTCAGGTACCCAAGGCAGCAT
LOC_Os08g10150
Target Sequence 
ACGCTAGGTTATCTCGCACCTGAGTATGCCATGATGGGCCATCTCACGGAGAAAGCTGATGTTTTTGCATTTGGAATCGT
GGCAATGGAAATCATTGCAGGAAGGCCAAACTTTGATGATAGCGTCGAGGATGATAAGAAATACCTACTTGGATGGGCAT
GGTGTTTGCATGAGAACAAGCAGCCACTTGAAATATTAGACCCAAAACTCACAGAATTCAACCAGGAAGAGGTCATGCGA
GTCATCAACGTCATTCTTCTTTGCACAATGGGCTTGCCTCATCAACGCCCACCGATGTCGAAAGTCGTGTCCATTCTTAC
AGAAGATATCGAGACGGTTGAAGTGGAAGCAAATGCGAGGCCTAGCTATATCCCTCAGTCGCAGATCAGGAGTGAGAATG
ATGGCTTCATAGCAGGCTACTTCTCAGGATCATCGATACAGCAATCTTCAGGTACCCAAGGCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.382.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis