Browse Element(s) Details


Os.7966.1.S1_at

Description gb:AK063903.1
DB_XREF= gi:32973921
TID=Os.7966.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.7966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-H08, full insert sequence.
FL= gb:AK119252.1 gb:AK063903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3866011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38629NANA6+22935861..22936325NA
LOC_Os06g38640OsAffx.27992.1.S1_at11/116+22937993..22939810Leucine Rich Repeat family protein
LOC_Os06g38650OsAffx.5048.1.S1_at11/116+22950399..22953848Leucine Rich Repeat family protein, expressed
LOC_Os06g38660OsAffx.5049.1.S1_s_at11/116+22955672..22956310expressed protein
LOC_Os06g38660Os.7966.1.S1_at11/116+22955672..22956310expressed protein
LOC_Os06g38670OsAffx.15823.1.S1_at10/116+22957564..22965353Leucine Rich Repeat family protein, expressed
LOC_Os06g38680Os.49927.1.S1_at11/116+22966819..22970854expressed protein
LOC_Os06g38700NANA6+22978951..22981668transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7966.1.S1_at--996--2791Chr06:22955904..22955928 (25 bp)
AAGATTAAATACACTGGGCACAGGG
LOC_Os06g38660
Os.7966.1.S1_at--342--9831Chr06:22955895..22955919 (25 bp)
TACACTGGGCACAGGGACGTGTTAA
LOC_Os06g38660
Os.7966.1.S1_at--927--10471Chr06:22955874..22955898 (25 bp)
TTAAAACCGTTCTCCTACATCGAAT
LOC_Os06g38660
Os.7966.1.S1_at--476--9871Chr06:22955859..22955883 (25 bp)
TACATCGAATGTCCGGAACTGCCTT
LOC_Os06g38660
Os.7966.1.S1_at--634--8171Chr06:22955845..22955869 (25 bp)
GGAACTGCCTTACGTGTACTGTGCA
LOC_Os06g38660
Os.7966.1.S1_at--423--9931Chr06:22955835..22955859 (25 bp)
TACGTGTACTGTGCACCGTGAGATT
LOC_Os06g38660
Os.7966.1.S1_at--239--1791Chr06:22955821..22955845 (25 bp)
ACCGTGAGATTGTGATGTTGTTTCA
LOC_Os06g38660
Os.7966.1.S1_at--1106--6271Chr06:22955808..22955832 (25 bp)
GATGTTGTTTCAGATAATTTCAGAC
LOC_Os06g38660
Os.7966.1.S1_at--1098--351Chr06:22955795..22955819 (25 bp)
ATAATTTCAGACACTATGATCAGGG
LOC_Os06g38660
Os.7966.1.S1_at--581--1951Chr06:22955759..22955783 (25 bp)
ACTGGCGTTAGGCTAGTTACTGCTA
LOC_Os06g38660
Os.7966.1.S1_at--451--4871Chr06:22955738..22955762 (25 bp)
GCTAGGGATAATGCAGATCAGGCTG
LOC_Os06g38660
Target Sequence 
AAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTG
TGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGCGTTAGGCTA
GTTACTGCTAGGGATAATGCAGATCAGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis