Browse Element(s) Details


Os.7987.1.S1_at

Description gb:AK067038.1
DB_XREF= gi:32977056
TID=Os.7987.1
CNT=146
FEA=FLmRNA
TIER=FL+Stack
STK=28
UG=Os.7987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) gigantea-like protein (P0666G04.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091I22, full insert sequence.
FL= gb:AK072166.1 gb:AK067038.1 gb:AK100147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0870011/11GIGANTEA protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08640NANA1+4301587..4301969transposon protein, putative, unclassified
LOC_Os01g08650Os.37600.1.S1_at10/111+4303684..4306737expressed protein
LOC_Os01g08660Os.7545.1.S1_a_at11/111+4310471..4312614Major intrinsic protein, expressed
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed
LOC_Os01g08700Os.7987.1.S1_at11/111+4326162..4335288GIGANTEA protein, putative, expressed
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08720NANA1+4354526..4357857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.47463.1.S1_x_at6/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08730Os.14491.2.S1_x_at5/111+4359930..4363629transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0042752biological_processregulation of circadian rhythm
GO:0048578biological_processpositive regulation of long-day photoperiodism, flowering
GO:0005634cellular_componentnucleus
GO:0005654cellular_componentnucleoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7987.1.S1_at--824--771Chr01:4326762..4326786 (25 bp)
ATGTCCGTGCACTCAGCATGTCCGT
LOC_Os01g08700
Os.7987.1.S1_at--272--7271Chr01:4326739..4326763 (25 bp)
GTCCTTCGCGACATCTTGAACAGCG
LOC_Os01g08700
Os.7987.1.S1_at--1140--331Chr01:4326709..4326733 (25 bp)
ATAAACTCCAGTAAGCTCATCCAAG
LOC_Os01g08700
Os.7987.1.S1_at--398--8211Chr01:4326675..4326699 (25 bp)
GGAATGGCATCCAGAGCCCAACCTA
LOC_Os01g08700
Os.7987.1.S1_at--463--2631Chr01:4326656..4326680 (25 bp)
AACCTACCAGTGCTTGGCAGCAAGC
LOC_Os01g08700
Os.7987.1.S1_at--677--8251Chr01:4326641..4326665 (25 bp)
GGCAGCAAGCATCATCAACTGGCAA
LOC_Os01g08700
Os.7987.1.S1_at--1048--9111Chr01:4326508..4326532 (25 bp)
TGCTGACAAGGCCACACCATGACTG
LOC_Os01g08700
Os.7987.1.S1_at--637--1731Chr01:4326493..4326517 (25 bp)
ACCATGACTGTCACTGCAAGCAGCT
LOC_Os01g08700
Os.7987.1.S1_at--499--4751Chr01:4326395..4326419 (25 bp)
GCTGATGTTCCCAAGCATGATACGG
LOC_Os01g08700
Os.7987.1.S1_at--37--7591Chr01:4326371..4326395 (25 bp)
GGGCTTGCTCCCAAGATGTGATTTT
LOC_Os01g08700
Os.7987.1.S1_at--54--7331Chr01:4326327..4326351 (25 bp)
GTGCTACCGCTGACATTAGATGTTC
LOC_Os01g08700
Target Sequence 
ATGTCCGTGCACTCAGCATGTCCGTCCTTCGCGACATCTTGAACAGCGGACAAATAAACTCCAGTAAGCTCATCCAAGGG
GAACACCGGAATGGCATCCAGAGCCCAACCTACCAGTGCTTGGCAGCAAGCATCATCAACTGGCAAGCCGATGTGGAGAG
ATGCATAGAGTGGGAAGCCCACAGCCGCCGCGCCACCGGGCTGACGCTCGCCTTCCTCACCGCGGCGGCGAAGGAGCTCG
GCTGCCCACTCACTTGCTGACAAGGCCACACCATGACTGTCACTGCAAGCAGCTGCTGTAGGATCAGCGAGTAGGAAAGG
ATGACTTGCCGGNCCAGTTTCCTGAGATGTGATTTAAGACTGATATTAGCTGATGTTCCCAAGCATGATACGGGGCTTGC
TCCCAAGATGTGATTTTTACTTTACTTTTGGTTAATGTGCTACCGCTGACATTAGATGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis