Browse Element(s) Details


Os.8019.1.S1_at

Description gb:CB658384
DB_XREF= gi:29662109
DB_XREF=OSJNEc14G05.r
CLONE=OSJNEc14G05
TID=Os.8019.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.8019 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) DNA-binding protein RAV2-like (P0034C09.33), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4983011/11DNA-binding protein RAV1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49830Os.8019.1.S1_at11/111+28946388..28947953DNA-binding protein RAV1, putative, expressed
LOC_Os01g49840OsAffx.23732.1.S1_at11/111+28949350..28949637hypothetical protein
LOC_Os01g49849NANA1+28952420..28952696NA
LOC_Os01g49860OsAffx.11537.1.S1_at11/111+28956419..28957326hypothetical protein
LOC_Os01g49870OsAffx.21485.1.S1_at10/111+28972043..28975273transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8019.1.S1_at--676--3851Chr01:28946847..28946871 (25 bp)
CTGCAAGTTAGTACGGTCGACCGGC
LOC_Os01g49830
Os.8019.1.S1_at--822--3191Chr01:28946651..28946675 (25 bp)
CAATGCATAGAGCTGGCACTAGTAT
LOC_Os01g49830
Os.8019.1.S1_at--600--1491Chr01:28946620..28946644 (25 bp)
AGCACTATTAGCTCGATCTTCTCTA
LOC_Os01g49830
Os.8019.1.S1_at--337--10371Chr01:28946586..28946610 (25 bp)
TTTTTTGCTCCCATGCATCATAATT
LOC_Os01g49830
Os.8019.1.S1_at--955--971Chr01:28946560..28946584 (25 bp)
AGGTGGTAGCTAGCTTAGTCCCTTG
LOC_Os01g49830
Os.8019.1.S1_at--79--7251Chr01:28946543..28946567 (25 bp)
GTCCCTTGTTGATCCTATCTACTAA
LOC_Os01g49830
Os.8019.1.S1_at--599--3131Chr01:28946497..28946521 (25 bp)
AATTTATTCGCCCATGTTCTTGCTT
LOC_Os01g49830
Os.8019.1.S1_at--47--3631Chr01:28946479..28946503 (25 bp)
CTTGCTTGCTTTGCTGTAAATCTTT
LOC_Os01g49830
Os.8019.1.S1_at--146--2271Chr01:28946462..28946486 (25 bp)
AAATCTTTTCATCCCAAGTGTACAC
LOC_Os01g49830
Os.8019.1.S1_at--476--7031Chr01:28946443..28946467 (25 bp)
GTACACTAATGAAGCATAGCCCTAG
LOC_Os01g49830
Os.8019.1.S1_at--364--1651Chr01:28946426..28946450 (25 bp)
AGCCCTAGAAGGCTAGACCAACTGA
LOC_Os01g49830
Target Sequence 
CTGCAAGTTAGTACGGTCGACCGGCGCCGCCCTCGCGTCGCCCGCTGATCAGCCAGCGCCGTCGCCGGTGAAGGCCGTCA
GGNTCTTNCGGCGTGGACCTGCTCACGGCGCCGGCGCCGGTCGAACAGATGGCCGGGTGCAAGAGAGCCAGGGACTTGGC
GGCGACGACGCCTCCACAAGCGGCGGCGTTCAAGAAGCAATGCATAGAGCTGGCACTAGTATAGAGTTAGCACTATTAGC
TCGATCTTCTCTAGCTAGTGTNTTTTTTGCTCCCATGCATCATAATTNAGGTGGTAGCTAGCTTAGTCCCTTGTTGATCC
TATCTACTAATCTNACTTGGTTTTTTTTGTTAATTTATTCGCCCATGTTCTTGCTTGCTTTGCTGTAAATCTTTTCATCC
CAAGTGTACACTAATGAAGCATAGCCCTAGAAGGCTAGACCAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis