Browse Element(s) Details


Os.8030.1.S1_at

Description gb:AK064216.1
DB_XREF= gi:32974234
TID=Os.8030.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-F06, full insert sequence.
FL= gb:AK064216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1970011/11Protein kinase APK1A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19670Os.14058.1.S1_at1/119+11766727..11770432retrotransposon protein, putative, unclassified
LOC_Os09g19680Os.10380.1.S1_at4/119+11777331..11784017ABC-type transport protein, putative, expressed
LOC_Os09g19690OsAffx.6336.1.S1_at11/119+11786006..11786278hypothetical protein
LOC_Os09g19700Os.8030.1.S1_at11/119+11788181..11792358Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os09g19710Os.23381.1.A1_at6/119+11795029..11797947hypersensitive-induced response protein, putative, expressed
LOC_Os09g19720Os.57110.1.S1_at11/119+11798225..11799570expressed protein
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8030.1.S1_at--1021--2211Chr09:11791762..11791786 (25 bp)
ACAAGCTAATTGACCCTCGTTTGGA
LOC_Os09g19700
Os.8030.1.S1_at--962--10451Chr09:11791827..11791851 (25 bp)
TTAGCACGTGCTTGTCTCAACCGGG
LOC_Os09g19700
Os.8030.1.S1_at--1037--5551Chr09:11791856..11791880 (25 bp)
GAAAGCCCGGCCACTGATGAGCCAA
LOC_Os09g19700
Os.8030.1.S1_at--1121--10031Chr09:11791885..11791909 (25 bp)
TAGAGGTTCTCAAGCCACTGCTCAA
LOC_Os09g19700
Os.8030.1.S1_at--677--9731Chr09:11791912..11791936 (25 bp)
TCAAGGACATGGCTAGCTCCTCGTA
LOC_Os09g19700
Os.8030.1.S1_at--685--4791Chr09:11791927..11791951 (25 bp)
GCTCCTCGTACTTCTATCAGACAAT
LOC_Os09g19700
Os.8030.1.S1_at--316--5291Chr09:11791963..11791987 (25 bp)
GAATGGCGCACTCAAGCAGCATGAA
LOC_Os09g19700
Os.8030.1.S1_at--993--7831Chr09:11791989..11792013 (25 bp)
GGTAGGAGCCATGCCCTTAAGGTGC
LOC_Os09g19700
Os.8030.1.S1_at--386--9051Chr09:11792011..11792035 (25 bp)
TGCAGGGTTCATTTGCTCGGAACGG
LOC_Os09g19700
Os.8030.1.S1_at--48--10311Chr09:11792258..11792282 (25 bp)
TTTCCCTTGTGGATGTTTGCACTGA
LOC_Os09g19700
Os.8030.1.S1_at--790--1951Chr09:11792290..11792314 (25 bp)
ACTGGATGCTGATAGACCCTTTTCT
LOC_Os09g19700
Target Sequence 
ACAAGCTAATTGACCCTCGTTTGGAGGGTAACTTCTCGGTCAAAGGTGCCCAGAAGGCAGCACAGTTAGCACGTGCTTGT
CTCAACCGGGNACCCGAAAGCCCGGCCACTGATGAGCCAAGTGGTAGAGGTTCTCAAGCCACTGCTCAACCTCAAGGACA
TGGCTAGCTCCTCGTACTTCTATCAGACAATGCAAGCTGAGAGAATGGCGCACTCAAGCAGCATGAATGGTAGGAGCCAT
GCCCTTAAGGTGCAGGGTTCATTTGCTCGGAACGGGCAGCAACCGATGAGGAGCCTGTCCGATGGCCCCCGTGCTTCCCC
GTTCCGCTACTCACCCAAGCCGAACGTGAAATAACTAGAGAATCCTGGTCTAGTTGGTGGAACTTGGTTGGGGGGCTGAG
TGGCTTGGCTGAACATTGTTGTGCAATCTGAATTGATCTTTCCTGTAGATTGACATGTGAAAATGGATATAGGTGAAAAG
GAGCTGTAGGTACCAGATTTCCCTTGTGGATGTTTGCACTGAGGNTTNAACTGGATGCTGATAGACCCTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis