Browse Element(s) Details


Os.8125.1.S1_x_at

Description gb:AK100038.1
DB_XREF= gi:32985247
TID=Os.8125.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151D12, full insert sequence.
FL= gb:AK100038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1159011/11integral membrane family protein, putative, expressed
LOC_Os02g060101/11integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11550Os.4900.2.A1_x_at11/113+5962588..5967855expressed protein
LOC_Os03g11550Os.4900.1.S1_at6/113+5962588..5967855expressed protein
LOC_Os03g11560Os.16764.1.S1_at11/113+5973248..5976549digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g11570Os.8973.1.S1_at11/113+5979008..5982883PCI domain containing protein, expressed
LOC_Os03g11580Os.15657.1.S1_at11/113+5985834..5990834expressed protein
LOC_Os03g11580Os.11750.1.A1_at1/113+5985834..5990834expressed protein
LOC_Os03g11590Os.8125.1.S1_x_at11/113+5992253..5996314integral membrane family protein, putative, expressed
LOC_Os03g11600Os.49773.1.S1_at10/113+6020360..6027796Drooping leaf protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015784biological_processGDP-mannose transport
GO:0005794cellular_componentGolgi apparatus
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005458molecular_functionGDP-mannose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8125.1.S1_x_at--677--3172Chr02:2997717..2997741 (25 bp)
AATTGGGCTCTTGATCTGCATGTCC
LOC_Os02g06010
Os.8125.1.S1_x_at--962--3831Chr03:5992833..5992857 (25 bp)
CTGCATGTCCGGTGGTGTTCTCTAC
LOC_Os03g11590
Os.8125.1.S1_x_at--1097--1071Chr03:5992719..5992743 (25 bp)
AGGGCTCGAAAGTAGCTCAACTCAG
LOC_Os03g11590
Os.8125.1.S1_x_at--15--2691Chr03:5992690..5992714 (25 bp)
AAGCGTCATCTTAAGCCTGGTAGGA
LOC_Os03g11590
Os.8125.1.S1_x_at--597--211Chr03:5992664..5992688 (25 bp)
ATTTGGCGTCGATATCTTACTCTCA
LOC_Os03g11590
Os.8125.1.S1_x_at--687--10451Chr03:5992648..5992672 (25 bp)
TTACTCTCAACCTCAAGACGGCTTC
LOC_Os03g11590
Os.8125.1.S1_x_at--1138--1931Chr03:5992631..5992655 (25 bp)
ACGGCTTCCCTGTATCATATTATGG
LOC_Os03g11590
Os.8125.1.S1_x_at--60--6871Chr03:5992574..5992598 (25 bp)
GTTTGTTCGTCATGCTAGAATCCTG
LOC_Os03g11590
Os.8125.1.S1_x_at--47--10031Chr03:5992559..5992583 (25 bp)
TAGAATCCTGTAATGCTGTTGGCAT
LOC_Os03g11590
Os.8125.1.S1_x_at--766--5231Chr03:5992411..5992435 (25 bp)
GAATACTCCGTATACAATATGCTGT
LOC_Os03g11590
Os.8125.1.S1_x_at--269--7891Chr03:5992367..5992391 (25 bp)
GGTTACCCTTTTCCATGCAGTATAT
LOC_Os03g11590
Target Sequence 
AATTGGGCTCTTGATCTGCATGTCCGGTGGTGTTCTCTACCAGCAATCCACCACAAAACCAAAGGCCCCCAAGGCTGAGC
CAAAAGAGGAGAATGATGAGGAGCAGCAGAAATTGCTGGAGATGCAGCAAGGGCTCGAAAGTAGCTCAACTCAGAAGCAA
GCGTCATCTTAAGCCTGGTAGGAAATTTGGCGTCGATATCTTACTCTCAACCTCAAGACGGCTTCCCTGTATCATATTAT
GGGATGCTAAAGAAGAATCATTTGGCCAAAGGATGTTTGTTCGTCATGCTAGAATCCTGTAATGCTGTTGGCATGAAAAA
TCTCAGAGAAAACTTAATGTCACTTTAAAATTCTTTGTTTAGTGGTATACCGTAATTCATTTGTTAGACCTGTGGTAGGG
TATCAATTATCAAAGAATCCTGAAACATACTCGAACAGAATACTCCGTATACAATATGCTGTTTCATTGATAATACAGGG
TGGTTACCCTTTTCCATGCAGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8125.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis