Browse Element(s) Details


Os.8150.2.S1_x_at

Description gb:AK100773.1
DB_XREF= gi:32985982
TID=Os.8150.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120B12, full insert sequence.
FL= gb:AK100773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4235010/11Sulfite reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42320NANA5+24665861..24672016retrotransposon protein, putative, unclassified
LOC_Os05g42330Os.12338.1.S1_at11/115+24678949..24684544secretory carrier membrane protein family protein, putative, expressed
LOC_Os05g42340NANA5+24691505..24692419hypothetical protein
LOC_Os05g42350Os.8150.1.S1_at11/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42350Os.8150.1.S1_a_at10/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42350Os.8150.2.S1_x_at10/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42360OsAffx.4598.1.S1_at10/115+24700443..24702099expressed protein
LOC_Os05g42370OsAffx.4599.1.S1_at11/115+24707749..24713388retrotransposon protein, putative, unclassified
LOC_Os05g42370OsAffx.15327.1.S1_at1/115+24707749..24713388retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019419biological_processsulfate reduction
GO:0005739cellular_componentmitochondrion
GO:0009536cellular_componentplastid
GO:0016002molecular_functionsulfite reductase activity
GO:0047889molecular_functionferredoxin-nitrate reductase activity
GO:0050311molecular_functionsulfite reductase (ferredoxin) activity
GO:0050421molecular_functionnitrite reductase (NO-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8150.2.S1_x_at--900--351Chr05:24696256..24696280 (25 bp)
ATAATGGTCGTGTCGCAGGGCAAGC
LOC_Os05g42350
Os.8150.2.S1_x_at--976--8191Chr05:24696192..24696216 (25 bp)
GGAAGTTAGCATTACTCCAAACCAG
LOC_Os05g42350
Os.8150.2.S1_x_at--155--8531Chr05:24696137..24696161 (25 bp)
TGGAAAGATCCCATCACAGCAGCTC
LOC_Os05g42350
Os.8150.2.S1_x_at--998--9731Chr05:24695800..24696132 (25 bp)
TCAATCTGGCCTGCTGGAACCAAAG
LOC_Os05g42350
Os.8150.2.S1_x_at--393--6291Chr05:24695775..24695799 (25 bp)
GATGTTGATCCCCTGAATATTACTT
LOC_Os05g42350
Os.8150.2.S1_x_at--134--231Chr05:24695759..24695783 (25 bp)
ATATTACTTCCATGGCATGTCCTGC
LOC_Os05g42350
Os.8150.2.S1_x_at--1010--2571Chr05:24695699..24695723 (25 bp)
AACGAGGGATTCTGCCGATTCTTAA
LOC_Os05g42350
Os.8150.2.S1_x_at--438--911Chr05:24695524..24695548 (25 bp)
AGGCTGCCCTAATGGATGCGCTAGA
LOC_Os05g42350
Os.8150.2.S1_x_at--842--6611Chr05:24695484..24695508 (25 bp)
GTTGGCTTTGTTGGTGATGGCCCAA
LOC_Os05g42350
Os.8150.2.S1_x_at--235--7391NONE
GTGATGGCCCAAACAGTTACCAGAT
NONE
Os.8150.2.S1_x_at--139--8171Chr05:24695311..24695335 (25 bp)
GGAACACCAAACCAGAGTACCCTAG
LOC_Os05g42350
Target Sequence 
ATAATGGTCGTGTCGCAGGGCAAGCAAAGAAAACTCTACGAGAGATTATTGAGAAGTACAATTTGGAAGTTAGCATTACT
CCAAACCAGAATCTTATCTTATGTGGGATTGATCAAGCATGGAAAGATCCCATCACAGCAGCTCTTGCTCAATCTGGCCT
GCTGGAACCAAAGGATGTTGATCCCCTGAATATTACTTCCATGGCATGTCCTGCCTTACCACTGTGCCCTCTAGCACAAA
CAGAAGCTGAACGAGGGATTCTGCCGATTCTTAAACGAATTAGAGCAGTTTTTGATAAGGTTGGCATCAAGGACCATGAG
TCGGTAGTGGTGAGGATAACAGGCTGCCCTAATGGATGCGCTAGACCATATATGGCAGAGGTTGGCTTTGTTGGTGATGG
CCCAAACAGTTACCAGATATGGCTTGGAGGAACACCAAACCAGAGTACCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8150.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis