Browse Element(s) Details


Os.8162.1.S1_at

Description gb:AK065794.1
DB_XREF= gi:32975812
TID=Os.8162.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042K01, full insert sequence.
FL= gb:AK065794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4491611/11Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44870NANA5+25991581..25993650Zinc knuckle family protein
LOC_Os05g44880NANA5+25996702..26002802retrotransposon protein, putative, unclassified
LOC_Os05g44890NANA5+26003418..26006759retrotransposon protein, putative, unclassified
LOC_Os05g44900Os.6662.1.S1_at11/115+26011673..26012715expressed protein
LOC_Os05g44910Os.5339.2.S1_x_at11/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44910Os.5339.1.S1_at10/115+26012784..26015983Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os05g44916Os.8162.1.S1_at11/115+26018012..26023064Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os05g44922OsAffx.27312.1.S1_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44922Os.12014.1.S1_s_at11/115+26023988..26029289phosphofructokinase family protein, putative, expressed
LOC_Os05g44930Os.21832.1.S1_at11/115+26030070..26034640Protein kinase domain containing protein, expressed
LOC_Os05g44940OsAffx.15106.1.S1_at11/115+26037156..26043728Protein kinase domain containing protein
LOC_Os05g44950NANA5+26046652..26050260Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0005759cellular_componentmitochondrial matrix
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8162.1.S1_at--871--7711Chr05:26022485..26022595 (25 bp)
GGGTGATGTTATTCATGTGCCTAGC
LOC_Os05g44916
Os.8162.1.S1_at--898--771Chr05:26022585..26022609 (25 bp)
ATGTGCCTAGCTACGAATCTGTCAG
LOC_Os05g44916
Os.8162.1.S1_at--771--891Chr05:26022608..26022632 (25 bp)
AGGCGCAAGTTCCATTCCAAGTGAG
LOC_Os05g44916
Os.8162.1.S1_at--301--2871Chr05:26022626..26022650 (25 bp)
AAGTGAGCATTCAGCACCTGGACCT
LOC_Os05g44916
Os.8162.1.S1_at--146--5831Chr05:26022646..26022670 (25 bp)
GACCTGCGTGGGTTGTTCTGGAATT
LOC_Os05g44916
Os.8162.1.S1_at--1112--2651Chr05:26022673..26022697 (25 bp)
AAGCCGCAGCTTTGCAGTGGCCAAA
LOC_Os05g44916
Os.8162.1.S1_at--1090--8431Chr05:26022691..26022715 (25 bp)
GGCCAAATGGCCATCGACTGGAATA
LOC_Os05g44916
Os.8162.1.S1_at--479--4291Chr05:26022771..26022795 (25 bp)
CCTCCCTATTCATGTTCTCAACTAA
LOC_Os05g44916
Os.8162.1.S1_at--412--431Chr05:26022833..26022857 (25 bp)
ATCATTCGGCGGCATGCTGCGTTTT
LOC_Os05g44916
Os.8162.1.S1_at--1008--4771Chr05:26022848..26022872 (25 bp)
GCTGCGTTTTGTTCAGTGGCATGCT
LOC_Os05g44916
Os.8162.1.S1_at--214--10211Chr05:26022993..26023017 (25 bp)
TATTAGCGTGTTTGCCCATTTGTAC
LOC_Os05g44916
Target Sequence 
GGGTGATGTTATTCATGTGCCTAGCTACGAATCTGTCAGGCGCAAGTTCCATTCCAAGTGAGCATTCAGCACCTGGACCT
GCGTGGGTTGTTCTGGAATTTCAAGCCGCAGCTTTGCAGTGGCCAAATGGCCATCGACTGGAATAAATAGAGCCCATACA
CAATTTTTGCTGGACAGATGAGGGGTGCATGATCAACTACCCTCCCTATTCATGTTCTCAACTAAGCATGTGATCATGCT
GCCACAATTCCGCGGCCCCTAAATCATTCGGCGGCATGCTGCGTTTTGTTCAGTGGCATGCTGCGTTTTTGTTCAGACGC
ACGCCAATATCGTCCTTCCTGTTTTACATTTTAATATAGAATCAGATGTTATGGCCTCATGGTTAAGCCATTTGCCTATT
CATCGGTGTCAGGTGTTTTTTTTATTAGCGTGTTTGCCCATTTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis