Browse Element(s) Details


Os.8165.1.S1_at

Description gb:AK065736.1
DB_XREF= gi:32975754
TID=Os.8165.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8165 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038J04, full insert sequence.
FL= gb:AK104930.1 gb:AK065736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5171011/11wound/stress protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51680Os.50393.1.S1_at11/112+31657211..31659949trehalose-phosphatase family protein, expressed
LOC_Os02g51689NANA2+31662925..31663303NA
LOC_Os02g51700Os.10260.1.S1_at11/112+31667275..31669420expressed protein
LOC_Os02g51710Os.8165.1.S1_at11/112+31670605..31671686wound/stress protein, putative, expressed
LOC_Os02g51720OsAffx.12598.1.S1_at11/112+31677677..31678615hypothetical protein
LOC_Os02g51730Os.18041.1.S1_at11/112+31680311..31684415TPR Domain containing protein, expressed
LOC_Os02g51740Os.51369.1.S1_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51740OsAffx.12599.1.S1_s_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51750Os.11915.1.S1_at11/112+31692292..31694577Annexin-like protein RJ4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8165.1.S1_at--751--6151Chr02:31671175..31671199 (25 bp)
GAGGTCACCGTCACGGGCGCGCACA
LOC_Os02g51710
Os.8165.1.S1_at--46--4411Chr02:31671334..31671358 (25 bp)
GCCACGCCGTGGGAAATAAGCTCGT
LOC_Os02g51710
Os.8165.1.S1_at--812--9791Chr02:31671350..31671374 (25 bp)
TAAGCTCGTACGTTATCTGTGGTGA
LOC_Os02g51710
Os.8165.1.S1_at--1071--9451Chr02:31671365..31671389 (25 bp)
TCTGTGGTGAGTGGCATCTGTAGAC
LOC_Os02g51710
Os.8165.1.S1_at--1143--2311Chr02:31671419..31671443 (25 bp)
AAAGATGGTAATCCGCGTGCGTTAT
LOC_Os02g51710
Os.8165.1.S1_at--55--4651Chr02:31671437..31671461 (25 bp)
GCGTTATCATGTACGGTGGATGCTA
LOC_Os02g51710
Os.8165.1.S1_at--834--6331Chr02:31671455..31671479 (25 bp)
GATGCTACAGACTATCCGACTAATA
LOC_Os02g51710
Os.8165.1.S1_at--642--3071Chr02:31671476..31671500 (25 bp)
AATAACTTTGCGAGTCGCCGGTGAT
LOC_Os02g51710
Os.8165.1.S1_at--591--9171Chr02:31671537..31671561 (25 bp)
TGCCGCCTCGTCATACAGAACAAAA
LOC_Os02g51710
Os.8165.1.S1_at--201--2271Chr02:31671570..31671594 (25 bp)
AAATCGCCTAAGACAGCAACGTAAA
LOC_Os02g51710
Os.8165.1.S1_at--71--9851Chr02:31671601..31671625 (25 bp)
TAAATCCAGCTCAATGACAACAATG
LOC_Os02g51710
Target Sequence 
GAGGTCACCGTCACGGGCGCGCACAAGGGGTGCGCGCAGCAGCTGTTCACCGTCGAGCAGTGGCTGGCCACCGACGCCGC
GCCCTACAAGCTCGAGGCCATCCGCGACAAATGCTCCGCCGCAGGAGCGGGCGCCGCCGCGGCGTGAGCGAGTGACGCGG
CCACGCCGTGGGAAATAAGCTCGTACGTTATCTGTGGTGAGTGGCATCTGTAGACTGTGGGGGGGTGTTCATGTTTTGAT
TTGTAAAGATGGTAATCCGCGTGCGTTATCATGTACGGTGGATGCTACAGACTATCCGACTAATAACTTTGCGAGTCGCC
GGTGATGAACCGGCGTTGTGTTTCCTCGGTTANNNANNNNNGTGCCGCCTCGTCATACAGAACAAAATGGAGGAAAAATC
GCCTAAGACAGCAACGTAAAGTGAAATAAATCCAGCTCAATGACAACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis