Browse Element(s) Details


Os.8170.1.S1_at

Description gb:AF145727.1
DB_XREF= gi:5006850
GEN=Oshox3
TID=Os.8170.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8170 (NCBI UniGene Cluster)
DEF=Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds.
PROD=homeodomain leucine zipper protein
FL= gb:AF145727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4557010/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45540NANA1+26185984..26186496hypothetical protein
LOC_Os01g45550Os.33170.1.S1_x_at11/111+26190565..26195111auxin efflux carrier protein, putative, expressed
LOC_Os01g45550Os.33170.2.S1_at10/111+26190565..26195111auxin efflux carrier protein, putative, expressed
LOC_Os01g45559NANA1+26195673..26196175NA
LOC_Os01g45570Os.8170.1.S1_at10/111+26207052..26210566Homeobox associated leucine zipper family protein, expressed
LOC_Os01g45570Os.8170.2.S1_x_at10/111+26207052..26210566Homeobox associated leucine zipper family protein, expressed
LOC_Os01g45580NANA1+26216076..26219312transposon protein, putative, unclassified
LOC_Os01g45590NANA1+26219952..26226107transposon protein, putative, unclassified
LOC_Os01g45600OsAffx.9239.1.S1_at7/111+26234822..26235079hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8170.1.S1_at--803--2891Chr01:26207419..26207443 (25 bp)
AAGGTCTCGCATCCTAAAGGCCACA
LOC_Os01g45570
Os.8170.1.S1_at--130--3731Chr01:26207383..26207407 (25 bp)
CTCGCCGTCCCGTGTAAATTGAAGG
LOC_Os01g45570
Os.8170.1.S1_at--1015--7771Chr01:26207313..26207337 (25 bp)
GGTCCAGTCGTCTCAGAGGAGTCAG
LOC_Os01g45570
Os.8170.1.S1_at--922--6691Chr01:26207255..26207279 (25 bp)
GTTCCATTGGTCGTTGATCTTAGCT
LOC_Os01g45570
Os.8170.1.S1_at--440--8871Chr01:26207230..26207254 (25 bp)
TGATGATCTGTGATTCGCGCCTTGC
LOC_Os01g45570
Os.8170.1.S1_at--132--10711Chr01:26207209..26207233 (25 bp)
TTGCTCGTCTAGGTTTCTCTTGGGC
LOC_Os01g45570
Os.8170.1.S1_at--863--10831Chr01:26207190..26207214 (25 bp)
TTGGGCCGACGCATGATCTTTTTTC
LOC_Os01g45570
Os.8170.1.S1_at--81--9431NONE
TCGGACCTTATTGGGCCTTTTGAGA
NONE
Os.8170.1.S1_at--740--3811Chr01:26207122..26207146 (25 bp)
CTCCTTGTTTCGCATGTGGACATGT
LOC_Os01g45570
Os.8170.1.S1_at--366--3511Chr01:26207102..26207126 (25 bp)
CATGTTATTTCGTCCTTTTGGGCCA
LOC_Os01g45570
Os.8170.1.S1_at--813--10391Chr01:26207087..26207111 (25 bp)
TTTTGGGCCAACAATTCAGCACGGT
LOC_Os01g45570
Target Sequence 
AAGGTCTCGCATCCTAAAGGCCACAAAAAGATGGGCCTCGCCGTCCCGTGTAAATTGAAGGAGACGACGCAGCGGTAGAG
GGCCCCGTGTCGGCGTTGTTGCGTCGGGTCCAGTCGTCTCAGAGGAGTCAGAGGCGTGGACAAAATGTTTGTTGCGGTGT
TTGTGTTCCATTGGTCGTTGATCTTAGCTTGATGATCTGTGATTCGCGCCTTGCTCGTCTAGGTTTCTCTTGGGCCGACG
CATGATCTTTTTTCCCCCGTGTCGGACCTTATTGGGCCTTTTGAGATCGACGGGCCCCCTCCTTGTTTCGCATGTGGACA
TGTTATTTCGTCCTTTTGGGCCAACAATTCAGCACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis