Browse Element(s) Details


Os.8199.1.S1_at

Description gb:AK065317.1
DB_XREF= gi:32975335
TID=Os.8199.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002P09, full insert sequence.
FL= gb:AK062049.1 gb:AK065317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1641011/11Isoflavone reductase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16360Os.51159.1.S1_at11/1112+9372347..9373384expressed protein
LOC_Os12g16370NANA12+9374429..9374710hypothetical protein
LOC_Os12g16380NANA12+9375600..9378693transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16390Os.45902.1.A1_x_at4/1112+9380407..9382020Zinc knuckle family protein
LOC_Os12g16390Os.56372.1.S1_at1/1112+9380407..9382020Zinc knuckle family protein
LOC_Os12g16400Os.47463.1.S1_x_at5/1112+9382878..9386593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16400Os.14491.2.S1_x_at4/1112+9382878..9386593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16410Os.8199.1.S1_at11/1112+9394476..9397820Isoflavone reductase homolog, putative, expressed
LOC_Os12g16410Os.14533.1.S1_a_at1/1112+9394476..9397820Isoflavone reductase homolog, putative, expressed
LOC_Os12g16420Os.14491.2.S1_x_at2/1112+9402534..9403505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16420Os.47463.1.S1_x_at1/1112+9402534..9403505transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16430OsAffx.7916.1.S1_at3/1112+9405236..9409253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g16440NANA12+9411970..9413508retrotransposon protein, putative, unclassified
LOC_Os12g16450OsAffx.828.1.S1_x_at4/1112+9415583..9421009retrotransposon protein, putative, unclassified
LOC_Os12g16460NANA12+9421649..9423296retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8199.1.S1_at--473--891Chr12:9395307..9395331 (25 bp)
AGGCCTCAAGATAACTGTCTCACTC
LOC_Os12g16410
Os.8199.1.S1_at--539--5971Chr12:9395235..9395259 (25 bp)
GAGAAATTCCACATACCTGGTGATG
LOC_Os12g16410
Os.8199.1.S1_at--1053--10451Chr12:9394814..9394838 (25 bp)
TTACCACATCTTTTACGAGGGCTGC
LOC_Os12g16410
Os.8199.1.S1_at--452--8331Chr12:9394795..9394819 (25 bp)
GGCTGCCTGGCAAACTTCGAGATTG
LOC_Os12g16410
Os.8199.1.S1_at--979--811Chr12:9394764..9394788 (25 bp)
ATGGTGCCGAGGCAACTCAGCTCTA
LOC_Os12g16410
Os.8199.1.S1_at--75--3511Chr12:9394718..9394742 (25 bp)
CATGGATGAGTACCTGAAACGCTAT
LOC_Os12g16410
Os.8199.1.S1_at--1121--5531Chr12:9394703..9394727 (25 bp)
GAAACGCTATATCTAACCGGTTCAA
LOC_Os12g16410
Os.8199.1.S1_at--116--431Chr12:9394617..9394641 (25 bp)
ATCTTCCCCTACCAGAATTGTTCAA
LOC_Os12g16410
Os.8199.1.S1_at--1077--251Chr12:9394587..9394611 (25 bp)
ATATGCCTGCTCGAATTTATGGTAC
LOC_Os12g16410
Os.8199.1.S1_at--1129--10051Chr12:9394562..9394586 (25 bp)
TAGTAGTCTAGTACATCCCCTCTTG
LOC_Os12g16410
Os.8199.1.S1_at--407--551Chr12:9394548..9394572 (25 bp)
ATCCCCTCTTGTTTGTTGACTCTGT
LOC_Os12g16410
Target Sequence 
AGGCCTCAAGATAACTGTCTCACTCAGAACGAGTTGATCTCAAANGTGGGAAACACTCACNTGGGAAAAGTCTTGAGAAA
TTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTA
CCACATCTTTTACGAGGGCTGCCTGGCAAACTTCGAGATTGGTGACAATGGTGCCGAGGCAACTCAGCTCTACCCAGAGG
TTCAGTACACCCGCATGGATGAGTACCTGAAACGCTATATCTAACCGGTTCAAATTTAAAGCATCTGCTTGTCAAATTTA
AAGATTGTAATCCGCANATGAGCATCCCTGGTCGATCTTCCCCTACCAGAATTGTTCAACGACAATATGCCTGCTCGAAT
TTATGGTACTAGTAGTCTAGTACATCCCCTCTTGTTTGTTGACTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis