Browse Element(s) Details


Os.8221.1.S1_a_at

Description gb:AK070740.1
DB_XREF= gi:32980763
TID=Os.8221.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8221 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.2 (OSJNBa0042L16.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063N02, full insert sequence.
FL= gb:AK104956.1 gb:AK070740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3510011/11MAP3K-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35060Os.18679.1.S1_at11/114+21123052..21130812nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os04g35070Os.51564.1.S1_at11/114+21132258..21133214expressed protein
LOC_Os04g35070Os.51564.1.S1_s_at11/114+21132258..21133214expressed protein
LOC_Os04g35080Os.9839.1.S1_at11/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35080OsAffx.26339.1.S1_x_at10/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35090Os.426.1.S1_at8/114+21142239..2114481040S ribosomal protein S10, putative, expressed
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8221.1.S1_a_at--362--7251Chr04:21145604..21145628 (25 bp)
GTCCGCGGACAGATGGGCCAATTTC
LOC_Os04g35100
Os.8221.1.S1_a_at--998--791Chr04:21145592..21145616 (25 bp)
ATGGGCCAATTTCATCGCCGTCGAT
LOC_Os04g35100
Os.8221.1.S1_a_at--949--3531Chr04:21145583..21145604 (22 bp)
CATCGCCGTCGATTTCTACAAGAGA
LOC_Os04g35100
Os.8221.1.S1_a_at--932--4731Chr04:21145443..21145467 (25 bp)
GCTGAAGCCACGGACAGGGCCAACG
LOC_Os04g35100
Os.8221.1.S1_a_at--530--4691Chr04:21145207..21145231 (25 bp)
GCGGCACGCCCAAAGGCATCTTTAA
LOC_Os04g35100
Os.8221.1.S1_a_at--389--2311Chr04:21145196..21145220 (25 bp)
AAAGGCATCTTTAACGCGACATCGG
LOC_Os04g35100
Os.8221.1.S1_a_at--581--10331Chr04:21145187..21145211 (25 bp)
TTTAACGCGACATCGGGCGCCACGG
LOC_Os04g35100
Os.8221.1.S1_a_at--1081--4091Chr04:21145147..21145171 (25 bp)
CGACGGCGACGTTGCAATGGCAGCA
LOC_Os04g35100
Os.8221.1.S1_a_at--972--1511Chr04:21145126..21145150 (25 bp)
AGCAGCTCATCATACTGGTGCCATC
LOC_Os04g35100
Os.8221.1.S1_a_at--394--8611Chr04:21145111..21145135 (25 bp)
TGGTGCCATCTACGCTGGCTGCTCT
LOC_Os04g35100
Os.8221.1.S1_a_at--925--8311Chr04:21145095..21145119 (25 bp)
GGCTGCTCTACTCTTGAGCCTTTGA
LOC_Os04g35100
Target Sequence 
GTCCGCGGACAGATGGGCCAATTTCATCGCCGTCGATTTCTACAAGAGAAGTGATCGAGGTGGTGCGGCTGAAGCCACGG
ACAGGGCCAACGGCGGACTGGTCTGTGGGTGTGGGAGCGTCTCTGCTTGCAGTGGCAATGGTACATGCACGACCGCTCGG
CACGGCGGCACGCCCAAAGGCATCTTTAACGCGACATCGGGCGCCACGGCGTTGCTGCGGCCGCCGACGGCGACGTTGCA
ATGGCAGCAGCTCATCATACTGGTGCCATCTACGCTGGCTGCTCTACTCTTGAGCCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8221.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis