Browse Element(s) Details


Os.8229.1.S1_at

Description gb:AK064750.1
DB_XREF= gi:32974768
TID=Os.8229.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F06, full insert sequence.
FL= gb:AK064750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5599011/11Synaptobrevin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55940Os.9947.1.S1_at10/112+34233082..34236231ribosomal protein S15 containing protein, expressed
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
LOC_Os02g55959NANA2+34248460..34248929NA
LOC_Os02g55970Os.17247.1.S1_at11/112+34249895..34254683Clathrin assembly protein, putative, expressed
LOC_Os02g55980Os.55507.1.S1_at10/112+34254953..34257219expressed protein
LOC_Os02g55980Os.55507.1.S1_x_at10/112+34254953..34257219expressed protein
LOC_Os02g55990Os.8229.1.S1_at11/112+34258114..34259944Synaptobrevin family protein, expressed
LOC_Os02g56000Os.145.1.S1_a_at11/112+34260098..3426405826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os02g56010Os.49119.1.S1_at11/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os02g56010OsAffx.19720.2.S1_s_at1/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006944biological_processmembrane fusion
GO:0046909biological_processintermembrane transport
GO:0005768cellular_componentendosome
GO:0005774cellular_componentvacuolar membrane
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8229.1.S1_at--652--9691Chr02:34258954..34258978 (25 bp)
TCACTGCTCTTGCTTATGCGATGAA
LOC_Os02g55990
Os.8229.1.S1_at--445--5691Chr02:34259013..34259037 (25 bp)
GACTACTACTCAAACGATCCCAACG
LOC_Os02g55990
Os.8229.1.S1_at--189--9631Chr02:34259265..34259288 (24 bp)
TCAGGTCCGGAATGTTATGATCGAC
LOC_Os02g55990
Os.8229.1.S1_at--798--9891Chr02:34259302..34259326 (25 bp)
TACTCGAGAGAGGTGATCGTCTGGA
LOC_Os02g55990
Os.8229.1.S1_at--947--4511Chr02:34259389..34259413 (25 bp)
GCCGCTTCAGAAACACCGTCTGGTG
LOC_Os02g55990
Os.8229.1.S1_at--81--1431Chr02:34259415..34259651 (25 bp)
AGAAATGTCAAGCTCACAGCCGCAT
LOC_Os02g55990
Os.8229.1.S1_at--838--4971Chr02:34259648..34259672 (25 bp)
GCATCGGTATTCATCCTTCTTGTAA
LOC_Os02g55990
Os.8229.1.S1_at--8--9071Chr02:34259685..34259709 (25 bp)
TGCTTGTATATATGTGCCACGGCTT
LOC_Os02g55990
Os.8229.1.S1_at--1086--3651Chr02:34259707..34259731 (25 bp)
CTTCACCTTACCGTCTTGTATTTAG
LOC_Os02g55990
Os.8229.1.S1_at--251--1731Chr02:34259735..34259759 (25 bp)
ACCTCTATACGAAGCTTCATTCCGA
LOC_Os02g55990
Os.8229.1.S1_at--1064--4391Chr02:34259892..34259916 (25 bp)
GCCAACTTGCCATCTAACCATGGTT
LOC_Os02g55990
Target Sequence 
TCACTGCTCTTGCTTATGCGATGAATGATGAGTTCTCGAGGGTTTTGGGCCAACAAATGGACTACTACTCAAACGATCCC
AACGCAGATAGAATATCTCGGATGAGAGGTGAAATGGATCAGGTCCGGAATGTTATGATCGACAACATTGACAAAGTACT
CGAGAGAGGTGATCGTCTGGAGCTGTTGGTCGACAAGACTGCAACTATGCAAGGGAACACGATGCGATTTAAACGACAAG
CTCGCCGCTTCAGAAACACCGTCTGGTGGAGAAATGTCAAGCTCACAGCCGCATCGGTATTCATCCTTCTTGTAATAATA
TACATAGTGCTTGTATATATGTGCCACGGCTTCACCTTACCGTCTTGTATTTAGTACACCTCTATACGAAGCTTCATTCC
GATCCTAAAATTGTCCCAGGTTCCTTGTAAGAGAAGCTCCGCTGTTGCAATTTTTCTTCNAACATAAAAGAGGCAATGTT
GCATTGCTTGATCTTGTAATTTTTTGCACCCACTCCTGGAAGCTCACCAATGTTGCCAACTTGCCATCTAACCATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis