Browse Element(s) Details


Os.8255.1.S1_x_at

Description gb:AK107282.1
DB_XREF= gi:32992491
TID=Os.8255.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B01, full insert sequence.
FL= gb:AK107282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3209011/11Methyl-binding domain protein MBD111, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32050Os.5166.1.S1_at11/119+19124990..19129456Chaperone protein dnaJ 10, putative, expressed
LOC_Os09g32060OsAffx.17981.1.S1_at11/119+19134581..19135324hypothetical protein
LOC_Os09g32070NANA9+19136562..19137512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g32080Os.12399.1.S1_at11/119+19147631..19149620Chitinase class I family protein, expressed
LOC_Os09g32090Os.8255.1.S1_x_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32090Os.8255.2.S1_at11/119+19150069..19155470Methyl-binding domain protein MBD111, putative, expressed
LOC_Os09g32100Os.16365.1.S1_at11/119+19165945..19167413expressed protein
LOC_Os09g32120OsAffx.5723.1.S1_x_at3/119+19173967..19178953hypothetical protein
LOC_Os09g32130Os.54276.1.A1_at10/119+19179647..19182707expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8255.1.S1_x_at--392--4951Chr09:19153882..19153906 (25 bp)
GCATTCACTGTCCAATGTGCCAAGT
LOC_Os09g32090
Os.8255.1.S1_x_at--934--5411Chr09:19153792..19153816 (25 bp)
GAACCTTTTGAGTGCGAACGAGCCC
LOC_Os09g32090
Os.8255.1.S1_x_at--858--2591Chr09:19153776..19153800 (25 bp)
AACGAGCCCGTGAGTGGAGACCTGA
LOC_Os09g32090
Os.8255.1.S1_x_at--792--5391Chr09:19153713..19153737 (25 bp)
GAAGCAGGCTTTGGGCTATTGACAA
LOC_Os09g32090
Os.8255.1.S1_x_at--915--1991Chr09:19153676..19153700 (25 bp)
ACTACCTCCTCCTGGATGGGAAAGA
LOC_Os09g32090
Os.8255.1.S1_x_at--219--7431Chr09:19152154..19152176 (23 bp)
GTGTATTACACTTCTCCTACTGGAA
LOC_Os09g32090
Os.8255.1.S1_x_at--437--1011Chr09:19151934..19151958 (25 bp)
AGGTACCTCTTGGAGAATCCGGATT
LOC_Os09g32090
Os.8255.1.S1_x_at--472--3111Chr09:19151882..19151906 (25 bp)
AATTTTCATTCCAGATTCCTAGGCC
LOC_Os09g32090
Os.8255.1.S1_x_at--117--10111Chr09:19151863..19151887 (25 bp)
TAGGCCTCTGCGACAGGACTATGTC
LOC_Os09g32090
Os.8255.1.S1_x_at--745--8111Chr09:19151848..19151872 (25 bp)
GGACTATGTCAAAAAGCGCCCTAAG
LOC_Os09g32090
Os.8255.1.S1_x_at--109--2431Chr09:19151695..19151719 (25 bp)
AAAACTTTCCATTTGCATGCTGAAC
LOC_Os09g32090
Target Sequence 
GCATTCACTGTCCAATGTGCCAAGTGTTTCAAATGGAGACTTATTCCGACAAAAGAGAAGTATGAAGAAATTCGTGAGTG
TATTATACAGGAACCTTTTGAGTGCGAACGAGCCCGTGAGTGGAGACCTGATGTAACATGTAATGATCCAGAAGATATAT
CTCAGGATGGAAGCAGGCTTTGGGCTATTGACAAACCCAATATTGCACTACCTCCTCCTGGATGGGAAAGACAGATCAGA
ATAAGAGGCGAAGGAGGCACCAAATTTGCTGATGTGTATTACACTTCTCCTACTGGAAGGAAACTGAGGTCACTGGTTGA
AATTGATAGGTACCTCTTGGAGAATCCGGATTATGTTGCACAGGGTGTAACATTAACTCAATTTTCATTCCAGATTCCTA
GGCCTCTGCGACAGGACTATGTCAAAAAGCGCCCTAAGATAGTGAATCCAAATGATGAAGCAAGTGTAGTAACGACCAAG
TCCGTTAAGCCGGAAGAAGGTGTGTAATGGCGTATAAATGAACTCATCATAACTAGTTAGCACATAATCAGTATTAATTC
TCAATAAAAACTTTCCATTTGCATGCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8255.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis