Browse Element(s) Details


Os.8260.1.S1_at

Description gb:AK109893.1
DB_XREF= gi:32995102
TID=Os.8260.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0075H14.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E09, full insert sequence.
FL= gb:AK109893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2868011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28650Os.35344.3.S1_x_at9/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650Os.35344.18.S1_x_at7/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28650OsAffx.22940.5.S1_x_at2/1110+14601998..14607709transposon protein, putative, Mutator sub-class
LOC_Os10g28660Os.46678.1.S1_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os10g28660Os.46678.2.S1_x_at11/1110+14614874..14619603Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os10g28680Os.8260.1.S1_at11/1110+14631191..14633483expressed protein
LOC_Os10g28690Os.56239.1.S1_at11/1110+14645242..14646975expressed protein
LOC_Os10g28700Os.53394.1.S1_at11/1110+14650476..14651268expressed protein
LOC_Os10g28710Os.22987.1.S1_at11/1110+14654071..14656835expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8260.1.S1_at--130--611Chr10:14631708..14631732 (25 bp)
ATGCCGCTACCACGAGATGCTATTC
LOC_Os10g28680
Os.8260.1.S1_at--934--5371Chr10:14631671..14631695 (25 bp)
GAAGAACTCTGACACCGATCGACTC
LOC_Os10g28680
Os.8260.1.S1_at--867--5711Chr10:14631651..14631675 (25 bp)
GACTCGCCAGATCTTCTATTTTGTA
LOC_Os10g28680
Os.8260.1.S1_at--187--7051Chr10:14631629..14631653 (25 bp)
GTAAACTCCAACTTGCTGATTCAAT
LOC_Os10g28680
Os.8260.1.S1_at--677--211Chr10:14631497..14631521 (25 bp)
ATTTGGTCTTTGTCAGATCATCTTA
LOC_Os10g28680
Os.8260.1.S1_at--143--9551Chr10:14631477..14631501 (25 bp)
TCTTAATTAATCTGCTCCCTTTTCT
LOC_Os10g28680
Os.8260.1.S1_at--956--9291Chr10:14631462..14631486 (25 bp)
TCCCTTTTCTGGTTCTTGTAGAGTG
LOC_Os10g28680
Os.8260.1.S1_at--769--1331Chr10:14631365..14631389 (25 bp)
AGAGATTGGCATTGTCCCTGTTTTT
LOC_Os10g28680
Os.8260.1.S1_at--968--9011Chr10:14631314..14631338 (25 bp)
TGCAACTGTTGCGTTCCATGATTTG
LOC_Os10g28680
Os.8260.1.S1_at--971--6991Chr10:14631217..14631241 (25 bp)
GTACGGATTGATTGGACTGTCCATC
LOC_Os10g28680
Os.8260.1.S1_at--1018--8111Chr10:14631204..14631228 (25 bp)
GGACTGTCCATCTCTAAGCAGCAAG
LOC_Os10g28680
Target Sequence 
ATGCCGCTACCACGAGATGCTATTCGACGAGGGCATCGAAGAACTCTGACACCGATCGACTCGCCAGATCTTCTATTTTG
TAAACTCCAACTTGCTGATTCAATCAGCCAGGTTAATTTTCAGAAATTGGAGAAGAAGATCAGCGTGATCCTGAAACTGG
AAGTGGCTCAAGGCCTCTCCCTCCTCAATTCCAAATGGCAAATGTTCAGATATTTGGTCTTTGTCAGATCATCTTAATTA
ATCTGCTCCCTTTTCTGGTTCTTGTAGAGTGGTAGCTAAGCTCATTAGGTGAGCAATTAGGAGCTAGTGTTCAGACTTCA
GAGTTGAGATCCATGTCGCCTTCAGAGATTGGCATTGTCCCTGTTTTTGTTTAAGTATGTATAAGAGTGGTTCATGCAAC
TGTTGCGTTCCATGATTTGCATGTCAGTGATGTCATTAGTGCTAGTGACCAGCACTAATGGCAGTGCTAGTGGGTCAGTG
TGGTAATAGTGGTACGGATTGATTGGACTGTCCATCTCTAAGCAGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis