Browse Element(s) Details


Os.8293.1.S1_at

Description gb:AK111553.1
DB_XREF= gi:37988216
TID=Os.8293.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-036-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050D21, full insert sequence.
FL= gb:AK111553.1 gb:AK112025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4507011/11PINHEAD protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45054Os.17568.1.S1_at11/112+27310155..27319782Zinc finger, C2H2 type family protein, expressed
LOC_Os02g45070Os.8293.1.S1_at11/112+27324306..27335863PINHEAD protein, putative, expressed
LOC_Os02g45080OsAffx.12501.1.S1_at11/112+27341534..27344352myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os02g45090Os.9264.1.S1_at11/112+27346205..27351144expressed protein
LOC_Os02g45100Os.56106.1.S1_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45100Os.56106.1.S2_at11/112+27351722..27353791Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os02g45110Os.20898.1.S1_at11/112+27354548..27359890N6-adenosine-methyltransferase MT-A70, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8293.1.S1_at--809--10111Chr02:27324936..27324960 (25 bp)
TATGCAAGGTGCACCCGTTCCGTAT
LOC_Os02g45070
Os.8293.1.S1_at--822--10171Chr02:27324815..27324938 (25 bp)
TATCAATCGTTCCTCCTGCATATTA
LOC_Os02g45070
Os.8293.1.S1_at--558--4691Chr02:27324780..27324804 (25 bp)
GCGGCATTTCGAGCTCGATTTTACA
LOC_Os02g45070
Os.8293.1.S1_at--302--3491Chr02:27324757..27324781 (25 bp)
CATGGAGCCGGATACTTCAGATAGT
LOC_Os02g45070
Os.8293.1.S1_at--684--9771Chr02:27324647..27324671 (25 bp)
TAAGGCCGCTTCCTGATCTGAAGGA
LOC_Os02g45070
Os.8293.1.S1_at--544--8731Chr02:27324619..27324643 (25 bp)
TGTCAAACGTGTCATGTTCTACTGC
LOC_Os02g45070
Os.8293.1.S1_at--177--7791Chr02:27324490..27324514 (25 bp)
GGTGCTGTGAACTATCGACCATGAT
LOC_Os02g45070
Os.8293.1.S1_at--934--1391Chr02:27324423..27324447 (25 bp)
AGACTCTTTCAGTGTGGCTACTCAA
LOC_Os02g45070
Os.8293.1.S1_at--1127--7531Chr02:27324410..27324434 (25 bp)
GTGGCTACTCAAATCATATCGTCGA
LOC_Os02g45070
Os.8293.1.S1_at--1063--4771Chr02:27324358..27324382 (25 bp)
GCTGCCATGTTTCCAGGACAAGCTG
LOC_Os02g45070
Os.8293.1.S1_at--683--3311Chr02:27324309..27324333 (25 bp)
CACTTGTTGGATGCGCACCTTGATT
LOC_Os02g45070
Target Sequence 
TATGCAAGGTGCACCCGTTCCGTATCAATCGTTCCTCCTGCATATTATGCCCATCTCGCGGCATTTCGAGCTCGATTTTA
CATGGAGCCGGATACTTCAGATAGTGGGTCGATGGCGAGCGGTGCCCATACCCGTGGCGGTGGCCCCCTTCCTGGTGCAC
GCAGCACTAAGCCTGCTGGGAATGTTGCTGTAAGGCCGCTTCCTGATCTGAAGGAAAATGTCAAACGTGTCATGTTCTAC
TGCTAAGTTTGGGAATATTTGTGTATGGGGGAAAACGTCTGACGGTTTGAGTCGCCCCCTGTTATCTAAGACGGAACGAC
CTATAGTGTGTGTACGTTAATGATTGTGGTGCTGTGAACTATCGACCATGATCTGGTTGTTTATCTATTATCAACACTAG
AAGTTGAGGATTCTAGACTCTTTCAGTGTGGCTACTCAAATCATATCGTCGAAGAAATGTAATAATTGACAATTACATTG
CTGCCATGTTTCCAGGACAAGCTGATCTCAGCTACTGCGGTTCCTTTCCACTTGTTGGATGCGCACCTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis