Browse Element(s) Details


Os.8363.1.S1_at

Description gb:AK063072.1
DB_XREF= gi:32973090
TID=Os.8363.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H03, full insert sequence.
FL= gb:AK063072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3121911/1150S ribosomal protein L27, putative, expressed
LOC_Os08g3122811/1150S ribosomal protein L27, putative, expressed
LOC_Os04g255409/1150S ribosomal protein L27, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31190NANA8+19145842..19148441transposon protein, putative, Mutator sub-class
LOC_Os08g31200Os.47907.1.S1_at1/118+19159979..19162067UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g31210OsAffx.17264.1.S1_s_at11/118+19166286..19168841hAT family dimerisation domain containing protein
LOC_Os08g31219Os.8363.1.S1_at11/118+19171897..1917299250S ribosomal protein L27, putative, expressed
LOC_Os08g31228Os.8363.1.S1_at11/118+19174559..1917812150S ribosomal protein L27, putative, expressed
LOC_Os08g31240OsAffx.29449.1.S1_x_at11/118+19181936..19185376metallopeptidase family M24 containing protein, expressed
LOC_Os08g31250Os.54351.1.S1_at11/118+19192294..19193343C1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8363.1.S1_at--1085--2293Chr08:19177323..19177347 (25 bp)
AAATGGCCGTGACTCTAACCCTAAG
LOC_Os08g31228
Os.8363.1.S1_at--666--5532Chr08:19177617..19177641 (25 bp)
GAAACATCATCATCCGCCAAAGAGG
LOC_Os08g31228
Os.8363.1.S1_at--281--9233Chr08:19177650..19177674 (25 bp)
TCCATCCTGGGAACTACGTTGGCAT
LOC_Os08g31228
Os.8363.1.S1_at--161--8213Chr08:19177677..19177701 (25 bp)
GGAAGGACCATACTCTCTTCTGTCT
LOC_Os08g31228
Os.8363.1.S1_at--342--10633Chr08:19177721..19177745 (25 bp)
TTCGAGCGCAACAAGCTGACTGGCA
LOC_Os08g31228
Os.8363.1.S1_at--388--814Chr08:19177750..19177774 (25 bp)
ATGGGTTCATGTTGATCCTGTTGCT
LOC_Os08g31228
Os.8363.1.S1_at--1001--4873Chr08:19177879..19177903 (25 bp)
GCTTTCGTCCTTGCCTTGAGAGTGA
LOC_Os08g31228
Os.8363.1.S1_at--700--4912Chr08:19177935..19177959 (25 bp)
GCTTCTGGGTTGAATTTGCTTGCAA
LOC_Os08g31228
Os.8363.1.S1_at--531--10353Chr08:19177995..19178019 (25 bp)
TTTTTGGTTCTTGCTGTGGCTTAAA
LOC_Os08g31228
Os.8363.1.S1_at--598--2833Chr08:19178032..19178056 (25 bp)
AAGTATCCTTTGTGATTTGTGGCAT
LOC_Os08g31228
Os.8363.1.S1_at--737--7913Chr08:19178060..19178084 (25 bp)
GGTTGACAAACCTACATGATTTATG
LOC_Os08g31228
Target Sequence 
AAATGGCCGTGACTCTAACCCTAAGTATTTGGGTGTTAAAAAGTTTGGCGGAGAGAAAGTGGANCCAGGAAACATCATCA
TCCGCCAAAGAGGAACCCGCTTCCATCCTGGGAACTACGTTGGCATGGGGAAGGACCATACTCTCTTCTGTCTGAAAGAA
GGACATGTGCGATTCGAGCGCAACAAGCTGACTGGCAGGAAATGGGTTCATGTTGATCCTGTTGCTGGGCATGTGCTCCA
CCCTGTCTACGCCAGTGATTCNACCCCTGCAGCTGAAATGGAGCCATTGTAATGGCTTTACATGGAATGAAGTAACATAT
GTTGCTNACAGCTTTCGTCCTTGCCTTGAGAGTGACTTCTCTAAAGAAACTTATTGCGATTAAGAGGCTTCTGGGTTGAA
TTTGCTTGCAATAAGGAACCTAACCATCATGTTNAGAACCCTTTTNTTTTTGGTTCTTGCTGTGGCTTAAAGTTGNTTNT
TTTAAGTATCCTTTGTGATTTGTGGCATGAAGGTTGACAAACCTACATGATTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis