Browse Element(s) Details


Os.8375.1.S1_at

Description gb:AK102045.1
DB_XREF= gi:32987254
TID=Os.8375.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081M13, full insert sequence.
FL= gb:AK102045.1 gb:AK058524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3710011/11equilibrative nucleoside transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37070NANA7+22203895..22204634hypothetical protein
LOC_Os07g37080OsAffx.16592.1.S1_at11/117+22209596..22211455F-box domain containing protein
LOC_Os07g37090Os.22408.1.S1_at11/117+22220606..22221642Ribosome inactivating protein, expressed
LOC_Os07g37100Os.8375.1.S1_at11/117+22229333..22232900equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37110Os.53971.1.S1_at11/117+22235127..22238625equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37120NANA7+22240025..22241838retrotransposon protein, putative, LINE subclass
LOC_Os07g37130Os.52135.1.S1_at11/117+22242231..22244796equilibrative nucleoside transporter, putative, expressed
LOC_Os07g37140Os.9008.1.S1_at11/117+22245963..22251138expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_s_at11/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.28791.2.A1_at10/117+22252083..22255035expressed protein
LOC_Os07g37150OsAffx.7080.1.S1_x_at1/117+22252083..22255035expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005337molecular_functionnucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8375.1.S1_at--294--8031Chr07:22229990..22230014 (25 bp)
GGAGGTACCTGCCACTGATCAAGTG
LOC_Os07g37100
Os.8375.1.S1_at--967--6451Chr07:22229974..22229998 (25 bp)
GATCAAGTGCATCAAGCTGACCTCC
LOC_Os07g37100
Os.8375.1.S1_at--1082--6391Chr07:22229573..22229597 (25 bp)
GATCGTGTTGTAATATCTCTGGCAT
LOC_Os07g37100
Os.8375.1.S1_at--513--691Chr07:22229550..22229574 (25 bp)
ATGAGAGACCCATTGGTTCTCCCTG
LOC_Os07g37100
Os.8375.1.S1_at--996--5251Chr07:22229475..22229499 (25 bp)
GAATCCTCCTATAAATCTGGCTGTT
LOC_Os07g37100
Os.8375.1.S1_at--345--4691Chr07:22229456..22229480 (25 bp)
GCTGTTAGCAACTCGTATGGGACCA
LOC_Os07g37100
Os.8375.1.S1_at--1124--31Chr07:22229430..22229454 (25 bp)
ATTGTGTGCCATTTTGACGACTTTT
LOC_Os07g37100
Os.8375.1.S1_at--918--5771Chr07:22229415..22229439 (25 bp)
GACGACTTTTGGCTGCAATGTGTTA
LOC_Os07g37100
Os.8375.1.S1_at--424--1111Chr07:22229391..22229415 (25 bp)
AGTGTAGTGCTGTAGTTCAACCCCG
LOC_Os07g37100
Os.8375.1.S1_at--1054--7671Chr07:22229354..22229378 (25 bp)
GGGTTCAATATAATCTGCAGCGCTT
LOC_Os07g37100
Os.8375.1.S1_at--394--3391Chr07:22229337..22229361 (25 bp)
CAGCGCTTGCGTTTGCTTGGATATA
LOC_Os07g37100
Target Sequence 
GGAGGTACCTGCCACTGATCAAGTGCATCAAGCTGACCTCCCGGAAGGGTCTCACGGGGGCGATCCTGGCTCGGTTCTTG
TTCATCCCCGCGTTCTACTTCACTGCCAAGTACGGCGATCAAGGCTACATGATCTTCCTGACGTCCTTCCTGGGCCTCAC
CAATGGCTTCCTCACCGTGTGCGTCCTCACCGAGGCGCCCAAAGGATACAAGGGGCCGGAGCAGAACGCGCTGGGCAACG
TGCTGGTGGTCTGCCTCCTCGGCGGCATTTTCTCCGGCGTTGTGCTCGACTGGCTGTGGTTGATAGGAAAAGGCTGGTGA
TCGTGTTGTAATATCTCTGGCATGAGAGACCCATTGGTTCTCCCTGCTCGGATGAGCGGGGCTGTTTTAACATCAGAATG
GCAGGAAAGAAAAAAAGAATCCTCCTATAAATCTGGCTGTTAGCAACTCGTATGGGACCANATTGTGTGCCATTTTGACG
ACTTTTGGCTGCAATGTGTTAGTGTAGTGCTGTAGTTCAACCCCGTCGTAAATTTTGGGGTTCAATATAATCTGCAGCGC
TTGCGTTTGCTTGGATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis