Browse Element(s) Details


Os.8400.1.S1_at

Description gb:AK058642.1
DB_XREF= gi:32968660
TID=Os.8400.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E05, full insert sequence.
FL= gb:AK120076.1 gb:AK058642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5089011/11secretory carrier membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50870Os.780.1.S1_a_at11/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.53256.1.S1_at10/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.7070.1.S1_at8/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50880OsAffx.14360.1.S1_at11/114+29886700..29889804Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os04g50890Os.8400.1.S1_at11/114+29890895..29894578secretory carrier membrane protein, putative, expressed
LOC_Os04g50900OsAffx.26555.1.S1_at11/114+29896282..29896741hypothetical protein
LOC_Os04g50910OsAffx.28971.2.S1_x_at11/114+29900089..29900652hypothetical protein
LOC_Os04g50920Os.49750.1.S1_at7/114+29913406..29917192WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045045biological_processsecretory pathway
GO:0005739cellular_componentmitochondrion
GO:0005386molecular_functioncarrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8400.1.S1_at--934--4431Chr04:29892403..29892427 (25 bp)
GCCATAGACACCTTTTCTGAGCATG
LOC_Os04g50890
Os.8400.1.S1_at--57--4991Chr04:29891236..29891260 (25 bp)
GCATCGCTTCTGTGCATACAAATCA
LOC_Os04g50890
Os.8400.1.S1_at--31--5971Chr04:29891202..29891226 (25 bp)
GAGAATGTCTCTTCATGTCAGTTTA
LOC_Os04g50890
Os.8400.1.S1_at--469--7851Chr04:29891149..29891173 (25 bp)
GGTAGGTTGTTAGCATCGTTATCAT
LOC_Os04g50890
Os.8400.1.S1_at--628--411Chr04:29891129..29891153 (25 bp)
ATCATAGCTTTGTGTCTGGAACGAG
LOC_Os04g50890
Os.8400.1.S1_at--849--6551Chr04:29891097..29891121 (25 bp)
GATTCTTGGCAAACTGTAGTCCGTA
LOC_Os04g50890
Os.8400.1.S1_at--1049--8811Chr04:29891070..29891094 (25 bp)
TGATTGGGTAGATCGCCGGTTTGCC
LOC_Os04g50890
Os.8400.1.S1_at--864--3731Chr04:29891024..29891048 (25 bp)
CTAAGGCTATTCTCGCTCGGGAAAA
LOC_Os04g50890
Os.8400.1.S1_at--15--271Chr04:29890965..29890989 (25 bp)
ATATGCACCCTTGCGGATTGTTGGC
LOC_Os04g50890
Os.8400.1.S1_at--164--7311Chr04:29890932..29890956 (25 bp)
GTGCTTCCCGATTTTTACTATCCAT
LOC_Os04g50890
Os.8400.1.S1_at--909--5031Chr04:29890897..29890921 (25 bp)
GCAGATTCATCTGGCACAATTCGTT
LOC_Os04g50890
Target Sequence 
GCCATAGACACCTTTTCTGAGCATGTGATAATTGGGATCTTTTACTTTGTGGGGTTCGCGCTGTTTTGCTTGGAGACACT
GCTGAGCATTGGAGTTCTTCAGAGAGTGTACATGTACTTCAGAGGGAACAAGTGAAGCTATTCATCATGATGGAAAGTTT
CCGGTGATCACCAGTAGCACACCTCTTCATGCATCGCTTCTGTGCATACAAATCAGTACACCCTGAGAATGTCTCTTCAT
GTCAGTTTATTGTGAAACCTTTTCAAGCTTGTTANGGGGTAGGTTGTTAGCATCGTTATCATAGCTTTGTGTCTGGAACG
AGGTGTTTTGATTCTTGGCAAACTGTAGTCCGTATGTGATTGGGTAGATCGCCGGTTTGCCTGTTGGTTACCGTTAAATG
AGCTAAGGCTATTCTCGCTCGGGAAAATAGACACAAAATTGCATTCAGACCTGGATCATATATATGCACCCTTGCGGATT
GTTGGCTTGATGCTGTGCTTCCCGATTTTTACTATCCATCTAACTCAAAGCAGATTCATCTGGCACAATTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis