Browse Element(s) Details


Os.8469.1.S1_at

Description gb:AK067677.1
DB_XREF= gi:32977695
TID=Os.8469.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116I04, full insert sequence.
FL= gb:AK067677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3414011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34110Os.47933.1.S1_at11/119+20127720..20133877expressed protein
LOC_Os09g34120OsAffx.30134.1.S1_at11/119+20145330..20145839expressed protein
LOC_Os09g34130Os.20730.1.S1_at11/119+20146717..20153743C2 domain-containing protein, putative, expressed
LOC_Os09g34140Os.8469.1.S1_at11/119+20155974..20157770expressed protein
LOC_Os09g34150Os.49413.1.A1_x_at11/119+20157225..20161527NB-ARC domain containing protein, expressed
LOC_Os09g34160OsAffx.30135.1.S1_at11/119+20162189..20167295NB-ARC domain containing protein, expressed
LOC_Os09g34170NANA9+20171841..20172152hypothetical protein
LOC_Os09g34180Os.6745.1.S1_at11/119+20179233..20182541FH protein NFH2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005943cellular_component1-phosphatidylinositol-4-phosphate kinase, class IA complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8469.1.S1_at--342--971Chr09:20156358..20156382 (25 bp)
AGGACCCCAGCGTCAGCGGCGTGCA
LOC_Os09g34140
Os.8469.1.S1_at--714--5571Chr09:20156449..20156473 (25 bp)
GAAAGGCAAGCCTGTCAGTCAATAA
LOC_Os09g34140
Os.8469.1.S1_at--766--3291Chr09:20156504..20156528 (25 bp)
CAAAGGTTGTTGCAGTGGTATCACT
LOC_Os09g34140
Os.8469.1.S1_at--940--6871Chr09:20156521..20156545 (25 bp)
GTATCACTATGCGATTAATCTACTG
LOC_Os09g34140
Os.8469.1.S1_at--74--3151Chr09:20156550..20156574 (25 bp)
AATTACCATATATGTGACTCGTTTC
LOC_Os09g34140
Os.8469.1.S1_at--764--5711Chr09:20156565..20156589 (25 bp)
GACTCGTTTCATTGTGGTGAGCATA
LOC_Os09g34140
Os.8469.1.S1_at--401--9751Chr09:20156618..20156642 (25 bp)
TAATGCGTCGTGTAATTAGTCTCCA
LOC_Os09g34140
Os.8469.1.S1_at--675--7071Chr09:20156629..20156653 (25 bp)
GTAATTAGTCTCCATGTCGCTGTTC
LOC_Os09g34140
Os.8469.1.S1_at--810--7231Chr09:20156644..20156668 (25 bp)
GTCGCTGTTCTTGCTGTGATTTTGA
LOC_Os09g34140
Os.8469.1.S1_at--556--6051Chr09:20156712..20156736 (25 bp)
GAGATTATTGGTGCCTTGATCATAT
LOC_Os09g34140
Os.8469.1.S1_at--559--3171Chr09:20156746..20156770 (25 bp)
AATTGAGCTAGGCACCTGCTCTTTA
LOC_Os09g34140
Target Sequence 
AGGACCCCAGCGTCAGCGGCGTGCAGGCGAAGGTGCTGGCCAGCANGAAGAGGAAGGAGGCCATGAAGGAGTTCGTGGCC
AAGATGAGGGAGAAAGGCAAGCCTGTCAGTCAATAACTGAAAAGGAGAAAAAAAGACAAAATCATACAAAGGTTGTTGCA
GTGGTATCACTATGCGATTAATCTACTGATTTAATTACCATATATGTGACTCGTTTCATTGTGGTGAGCATATAAAGATC
AACAGGGATAAAGGGAATAATAATGCGTCGTGTAATTAGTCTCCATGTCGCTGTTCTTGCTGTGATTTTGATGAACACTC
AATAAATCGACATAGGATGTTTATGCAATTATTAGAGATTATTGGTGCCTTGATCATATNNTCAAAACAATTGAGCTAGG
CACCTGCTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis