Browse Element(s) Details


Os.8515.1.A1_at

Description gb:CB621045
DB_XREF= gi:29616033
DB_XREF=OSIIEa06K23.r
CLONE=OSIIEa06K23
TID=Os.8515.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8515 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g326101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein
LOC_Os09g32570Os.56234.1.S1_at11/119+19442812..19444429Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32580OsAffx.17986.1.S1_at11/119+19445053..19447503expressed protein
LOC_Os09g32590OsAffx.6472.1.S1_at11/119+19448704..19449267hypothetical protein
LOC_Os09g32600OsAffx.6473.1.S1_at11/119+19454454..19457078F-box domain containing protein
LOC_Os09g32610Os.8515.1.A1_at1/119+19458688..19462253expressed protein
LOC_Os09g32620NANA9+19464287..19465759Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32630OsAffx.30123.1.S1_at11/119+19466227..19466736hypothetical protein
LOC_Os09g32640Os.55534.1.A1_at11/119+19468469..19471212Chloroplastic quinone-oxidoreductase homolog, putative, expressed
LOC_Os09g32650Os.51218.1.S1_at11/119+19472098..19476734leucyl-tRNA synthetase family protein, expressed
LOC_Os09g32660Os.52571.1.A1_at11/119+19478243..19481680expressed protein
LOC_Os09g32670Os.18486.1.S1_at11/119+19485779..19487685NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8515.1.A1_at--1050--5571Chr09:19458945..19458969 (25 bp)
GAAATACATCGCAGGGAAAGTTCCC
LOC_Os09g32610
Os.8515.1.A1_at--592--2331NONE
AAAGTTCCCTCTGCTGTTAGATTAA
NONE
Os.8515.1.A1_at--139--6091NONE
GAGTATGCTTTTTTGGTTCCAATCT
NONE
Os.8515.1.A1_at--595--7891NONE
GGTTCCAATCTTTGTAAGACTTTTG
NONE
Os.8515.1.A1_at--830--9311NONE
TCCCTGTCAGTTTTCCTGGTCAAAA
NONE
Os.8515.1.A1_at--919--6811NONE
GTTTTTCAGTAATTTATCAGCACCA
NONE
Os.8515.1.A1_at--220--391NONE
ATCAGCACCAAAGCGGGCTGCTAAT
NONE
Os.8515.1.A1_at--156--3891NONE
CTGTGCTGTAAAGTTGTCCTGTAAA
NONE
Os.8515.1.A1_at--154--3111NONE
AATATAGATTTTGAATGCCCTGGAG
NONE
Os.8515.1.A1_at--284--3031Chr09:19458557..19458710 (25 bp)
AATGCCCTGGAGTTCGGTTGGATGT
NONE
Os.8515.1.A1_at--260--6271NONE
GATGTGTTGTGACTCCAATACTTGT
NONE
Target Sequence 
GAAATACATCGCAGGGAAAGTTCCCTCTGCTGTTAGATTAAGTGTTCTGGATGCTAGNGAATGANACGCTATAGGGCATC
NATTNTCATTTTGTGANCCNCGCGTCCNCGCTCATTTTGTGCNACTTTTTGATGANCCNCGCTCTGTTTACTAAATTATT
GGGGTCGTTAAAAGTTTAGTTGGAGTATGCTTTTTTGGTTCCAATCTTTGTAAGACTTTTGGGGGGTTCTTATAATATAT
AAAATATAACTGGGGGGGGAATCCCTGTCAGTTTTCCTGGTCAAAAAAAAGGGGGGGGTTTAGTTTTTCAGTAATTTATC
AGCACCAAAGCGGGCTGCTAATAGGGGGTAACTGTGCTGTAAAGTTGTCCTGTAAAATATAGATTTTGAATGCCCTGGAG
TTCGGTTGGATGTGTTGTGACTCCAATACTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8515.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis