Browse Element(s) Details


Os.8519.1.S1_a_at

Description gb:AK072845.1
DB_XREF= gi:32982868
TID=Os.8519.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8519 (NCBI UniGene Cluster)
UG_TITLE=Putative histone deacetylase HD2 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142J09, full insert sequence.
FL= gb:AF255711.1 gb:AK072845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5183011/11Histone deacetylase 2b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51790Os.14983.1.S1_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51790Os.14983.1.S2_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51800OsAffx.27409.1.S1_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800OsAffx.27409.1.S1_x_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800Os.24682.1.A1_at2/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51810OsAffx.18284.3.S1_at9/115+29665047..29666047hypothetical protein
LOC_Os05g51820OsAffx.15202.1.S1_at11/115+29666475..29667253Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g51830Os.8519.1.S1_a_at11/115+29670091..29671678Histone deacetylase 2b, putative, expressed
LOC_Os05g51840NANA5+29671797..29673033Histone deacetylase 2a, putative, expressed
LOC_Os05g51850Os.12748.2.S1_x_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51850Os.12748.1.S1_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51860OsAffx.4685.1.S1_at10/115+29679907..29683767hypothetical protein
LOC_Os05g51870OsAffx.32051.1.S1_x_at1/115+29688175..29688624hypothetical protein
LOC_Os05g51879NANA5+29688991..29689418NA
LOC_Os05g51890OsAffx.21779.1.S1_at10/115+29691646..29693191retrotransposon protein, putative, unclassified
LOC_Os05g51890OsAffx.21779.3.S1_at3/115+29691646..29693191retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0004407molecular_functionhistone deacetylase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8519.1.S1_a_at--535--7411Chr05:29670949..29670973 (25 bp)
GTGTTGAAGACACCTTCGTCTGATA
LOC_Os05g51830
Os.8519.1.S1_a_at--682--5631Chr05:29670941..29670965 (25 bp)
GACACCTTCGTCTGATAAGAAAGCA
LOC_Os05g51830
Os.8519.1.S1_a_at--615--1491Chr05:29670920..29670944 (25 bp)
AGCAAAGATTGCTACACCGTCAGGC
LOC_Os05g51830
Os.8519.1.S1_a_at--346--1791Chr05:29670908..29670929 (22 bp)
ACCGTCAGGCCAGAAGACAGGTGAC
LOC_Os05g51830
Os.8519.1.S1_a_at--793--2211Chr05:29670796..29670820 (25 bp)
ACAAGAAGGGTGTCCATGTAGCAAC
LOC_Os05g51830
Os.8519.1.S1_a_at--598--751Chr05:29670781..29670805 (25 bp)
ATGTAGCAACTCCACATCCGGCAAA
LOC_Os05g51830
Os.8519.1.S1_a_at--797--9211Chr05:29670771..29670795 (25 bp)
TCCACATCCGGCAAAGCAGGCTAGC
LOC_Os05g51830
Os.8519.1.S1_a_at--42--3951Chr05:29670763..29670787 (25 bp)
CGGCAAAGCAGGCTAGCAAGACCCC
LOC_Os05g51830
Os.8519.1.S1_a_at--303--1491Chr05:29670749..29670773 (25 bp)
AGCAAGACCCCCGTGAATGACAAGT
LOC_Os05g51830
Os.8519.1.S1_a_at--856--5591Chr05:29670731..29670755 (25 bp)
GACAAGTCAAAGGAGAAGTCCCCAA
LOC_Os05g51830
Os.8519.1.S1_a_at--552--9691Chr05:29670725..29670749 (25 bp)
TCAAAGGAGAAGTCCCCAAAATCCG
LOC_Os05g51830
Target Sequence 
GTGTTGAAGACACCTTCGTCTGATAAGAAAGCAAAGATTGCTACACCGTCAGGCCAGAAGACAGGTGACAAGAAGGGTGT
CCATGTAGCAACTCCACATCCGGCAAAGCAGGCTAGCAAGACCCCCGTGAATGACAAGTCAAAGGAGAAGTCCCCAAAAT
CCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8519.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis