Browse Element(s) Details


Os.8551.1.S1_s_at

Description gb:AK101629.1
DB_XREF= gi:32986838
TID=Os.8551.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033054L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033054L18, full insert sequence.
FL= gb:AK101629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0452011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04480Os.17819.1.S1_at11/112+1979693..1983599Splicing factor 3B subunit 3, putative, expressed
LOC_Os02g04490Os.27735.1.A1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.9571.1.S1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.55210.1.S1_at1/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04500Os.54143.1.S1_at10/112+1998224..2000813S-adenosyl-methyltransferase MraW family protein, expressed
LOC_Os02g04510NANA2+2001938..2005401NmrA-like family protein
LOC_Os02g04520Os.8551.1.S1_s_at11/112+2007232..2009961expressed protein
LOC_Os02g04530OsAffx.2504.1.S1_at11/112+2011707..2018122NB-ARC domain containing protein
LOC_Os02g04540OsAffx.28180.1.S1_s_at2/112+2021090..2023354retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8551.1.S1_s_at--522--5411Chr02:2009271..2009295 (25 bp)
GAACTGAACGAGCTTGAAACCATGG
LOC_Os02g04520
Os.8551.1.S1_s_at--28--5551Chr02:2009286..2009310 (25 bp)
GAAACCATGGAACCGGCATCTGCTG
LOC_Os02g04520
Os.8551.1.S1_s_at--495--9492Chr04:26588572..26588719 (24 bp)
TCTGCTGCATGCCAAGGAGTGATCA
NONE
Os.8551.1.S1_s_at--899--9771Chr02:2009421..2009445 (25 bp)
TACAGAGGGAAAATCCGACCCGCTT
LOC_Os02g04520
Os.8551.1.S1_s_at--437--1711Chr02:2009560..2009584 (25 bp)
ACCATTGGTCCAGAGAACGCTTCTT
LOC_Os02g04520
Os.8551.1.S1_s_at--949--2971Chr02:2009627..2009651 (25 bp)
AATGGTGGGCATCCAAAGGCTCAGA
LOC_Os02g04520
Os.8551.1.S1_s_at--147--1311Chr02:2009675..2009699 (25 bp)
AGATGAGACTACCAGCTTTGTGCAG
LOC_Os02g04520
Os.8551.1.S1_s_at--952--3071Chr02:2009705..2009729 (25 bp)
AATCACCTGAACTGTATCATCCACG
LOC_Os02g04520
Os.8551.1.S1_s_at--870--10151Chr02:2009719..2009743 (25 bp)
TATCATCCACGGATGGCTTGGCAGC
LOC_Os02g04520
Os.8551.1.S1_s_at--497--2751Chr02:2009748..2009772 (25 bp)
AAGAACACAACGTCGCTTGCCGCCT
LOC_Os02g04520
Os.8551.1.S1_s_at--1101--7571Chr02:2009776..2009800 (25 bp)
GGGCTGTCTAGTTCTTCTCAGGACA
LOC_Os02g04520
Target Sequence 
GAACTGAACGAGCTTGAAACCATGGAACCGGCATCTGCTGCATGCCAAGGAGTGATCACAAGTACAGAGGGAAAATCCGA
CCCGCTTCTTCCTGTCACCATTGGTCCAGAGAACGCTTCTTGGGAGAGATGGTTTCAGCGCGTGCGTAGCTCTCGCAGTA
ACNAATGGTGGGCATCCAAAGGCTCAGATTTTTCCTAGCCCCCTCCTGCAAAGATGAGACTACCAGCTTTGTGCAGATTA
AAATCACCTGAACTGTATCATCCACGGATGGCTTGGCAGCCAACAAGAACACAACGTCGCTTGCCGCCTTGCGGGCTGTC
TAGTTCTTCTCAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8551.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis