Browse Element(s) Details


Os.8555.1.S1_at

Description gb:AK070904.1
DB_XREF= gi:32980927
TID=Os.8555.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.8555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065J01, full insert sequence.
FL= gb:AK070904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0672011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06690Os.52169.1.S1_at11/115+3450334..3463103HECT-domain-containing protein, putative, expressed
LOC_Os05g06700Os.6413.1.S1_a_at11/115+3467185..3470310FAM18-like protein At1g09330, putative, expressed
LOC_Os05g06710Os.15072.1.S1_at11/115+3470699..3474778GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g06720Os.8555.1.S1_at11/115+3477116..3478845GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g06730OsAffx.4264.1.S1_at11/115+3490294..3490563hypothetical protein
LOC_Os05g06740OsAffx.26763.1.S1_at11/115+3493623..3496463hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8555.1.S1_at--703--8131Chr05:3478077..3478101 (25 bp)
GGACATGTTCGCCATCAAGTATGAT
LOC_Os05g06720
Os.8555.1.S1_at--285--2831Chr05:3478061..3478085 (25 bp)
AAGTATGATCTTGTTGCCAACCACA
LOC_Os05g06720
Os.8555.1.S1_at--30--4771Chr05:3477558..3477582 (25 bp)
GCTGCACGGCCAATGACAAGGACCT
LOC_Os05g06720
Os.8555.1.S1_at--767--2051Chr05:3477492..3477516 (25 bp)
ACTTCACCGATGCTGCAAACGAGAT
LOC_Os05g06720
Os.8555.1.S1_at--873--2571Chr05:3477475..3477499 (25 bp)
AACGAGATCGTTGCTTCTAAAGTGA
LOC_Os05g06720
Os.8555.1.S1_at--345--7531Chr05:3477447..3477471 (25 bp)
GTGGCGAATTTTCCATTCCTAGGAT
LOC_Os05g06720
Os.8555.1.S1_at--554--10091Chr05:3477428..3477452 (25 bp)
TAGGATCAAGCTGACCGCCAGCGTT
LOC_Os05g06720
Os.8555.1.S1_at--187--4331Chr05:3477411..3477435 (25 bp)
CCAGCGTTGTCAGGCCCAAAAAGGC
LOC_Os05g06720
Os.8555.1.S1_at--497--7771Chr05:3477327..3477351 (25 bp)
GGTGAATCACTAACAGATCTGGCCA
LOC_Os05g06720
Os.8555.1.S1_at--786--5191Chr05:3477294..3477318 (25 bp)
GAATTCATTTGATTTCAGGCCCTTT
LOC_Os05g06720
Os.8555.1.S1_at--833--891Chr05:3477278..3477302 (25 bp)
AGGCCCTTTTCGGTCATTGAGGAAG
LOC_Os05g06720
Target Sequence 
GGACATGTTCGCCATCAAGTATGATCTTGTTGCCAACCACACGAAACACGGGATTGAGAAGCCATTGATGACATGTTGTG
GACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAG
AAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATT
TTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGA
TTATTTTGGTTTCCCAAAGGAAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCA
GGCCCTTTTCGGTCATTGAGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis