Browse Element(s) Details


Os.8565.1.S1_at

Description gb:AK066073.1
DB_XREF= gi:32976091
TID=Os.8565.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.8565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058P13, full insert sequence.
FL= gb:AK060822.1 gb:AK066073.1 gb:AK067696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3249011/11Acetyl-coenzyme A synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32460Os.27153.1.S1_at11/112+19186632..19191203Molybdenum cofactor synthesis protein 3, putative, expressed
LOC_Os02g32470NANA2+19197378..19197800hypothetical protein
LOC_Os02g32480OsAffx.24539.1.S1_at11/112+19205476..19206954hypothetical protein
LOC_Os02g32480Os.8008.1.S1_a_at1/112+19205476..19206954hypothetical protein
LOC_Os02g32490Os.8565.1.S1_at11/112+19213179..19219140Acetyl-coenzyme A synthetase, putative, expressed
LOC_Os02g32504Os.34481.1.A1_at11/112+19219510..19229756expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016207molecular_function4-coumarate-CoA ligase activity
GO:0016208molecular_functionAMP binding
GO:0016874molecular_functionligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8565.1.S1_at--38--2371Chr02:19218452..19218476 (25 bp)
AAAGCCTCATATTGACAGTCCGCAA
LOC_Os02g32490
Os.8565.1.S1_at--185--10731Chr02:19218626..19218650 (25 bp)
TTGCAGCTCCTGACAAGATCCACTG
LOC_Os02g32490
Os.8565.1.S1_at--278--2491Chr02:19218719..19218743 (25 bp)
AACAGCTGGATGAACTTGGTGACAC
LOC_Os02g32490
Os.8565.1.S1_at--780--6651Chr02:19218769..19218793 (25 bp)
GTTGACCAGCTGATTGCGCTCAAAG
LOC_Os02g32490
Os.8565.1.S1_at--130--1311Chr02:19218821..19218845 (25 bp)
AGATGCACTTCCACTGATGCTTGTG
LOC_Os02g32490
Os.8565.1.S1_at--900--6691Chr02:19218847..19218871 (25 bp)
GTTCCATTTCTCTTCCTATATGATG
LOC_Os02g32490
Os.8565.1.S1_at--169--6251Chr02:19218868..19218892 (25 bp)
GATGGAGATGCACTTTCTCTTCCTA
LOC_Os02g32490
Os.8565.1.S1_at--254--7271Chr02:19218902..19218926 (25 bp)
GTCCATAGTCTTTCGTTTATTCGGT
LOC_Os02g32490
Os.8565.1.S1_at--368--5351Chr02:19218928..19218952 (25 bp)
GAAGTTGCTCCTGGTCTAGGGAACT
LOC_Os02g32490
Os.8565.1.S1_at--1093--6611Chr02:19218986..19219010 (25 bp)
GTTGGACTTCTGTATACTTGTGTTA
LOC_Os02g32490
Os.8565.1.S1_at--418--6031Chr02:19219017..19219041 (25 bp)
GAGATGACTTGCTCCATGAATGTAT
LOC_Os02g32490
Target Sequence 
AAAGCCTCATATTGACAGTCCGCAACCAGATTGGGGCATTTGCAGCTCCTGACAAGATCCACTGGGCACCAGGACTTCCT
AAAACGAGAAGCGGTAAGATAATGCGCAGGATTCTGCGCAAAATTGCCTCAAAACAGCTGGATGAACTTGGTGACACAAG
CACCCTTGCTGATCCTGGCGTCGTTGACCAGCTGATTGCGCTCAAAGATTGCTAGATTGTAAAAATTAGATGACAGATGC
ACTTCCACTGATGCTTGTGCGTTCCATTTCTCTTCCTATATGATGGAGATGCACTTTCTCTTCCTACATTTTAGTGTCCA
TAGTCTTTCGTTTATTCGGTGGAAGTTGCTCCTGGTCTAGGGAACTGAAACACGATATGGAATGATCTGAGAGTGTGCGN
TGTTGGACTTCTGTATACTTGTGTTACACATTGAGATGACTTGCTCCATGAATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis