Browse Element(s) Details


Os.27153.1.S1_at

Description gb:AK065368.1
DB_XREF= gi:32975386
TID=Os.27153.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021B13, full insert sequence.
FL= gb:AK065368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3246011/11Molybdenum cofactor synthesis protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32420OsAffx.2829.1.S1_at11/112+19160680..19162080expressed protein
LOC_Os02g32420OsAffx.2829.1.S1_x_at11/112+19160680..19162080expressed protein
LOC_Os02g32430Os.10953.1.A1_at11/112+19171915..19173974WD40 repeat protein, putative, expressed
LOC_Os02g32440NANA2+19174366..19175550expressed protein
LOC_Os02g32450Os.51245.1.S1_at11/112+19180457..19181216expressed protein
LOC_Os02g32460Os.27153.1.S1_at11/112+19186632..19191203Molybdenum cofactor synthesis protein 3, putative, expressed
LOC_Os02g32470NANA2+19197378..19197800hypothetical protein
LOC_Os02g32480OsAffx.24539.1.S1_at11/112+19205476..19206954hypothetical protein
LOC_Os02g32480Os.8008.1.S1_a_at1/112+19205476..19206954hypothetical protein
LOC_Os02g32490Os.8565.1.S1_at11/112+19213179..19219140Acetyl-coenzyme A synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016925biological_processprotein sumoylation
GO:0008265molecular_functionMo-molybdopterin cofactor sulfurase activity
GO:0019948molecular_functionSUMO activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27153.1.S1_at--20--5331Chr02:19190612..19190636 (25 bp)
GAAGTGCCCGTGTCACTTGTAAAGA
LOC_Os02g32460
Os.27153.1.S1_at--679--2971Chr02:19190656..19190680 (25 bp)
AATGGTGAACGCCATCTTCTGTTGG
LOC_Os02g32460
Os.27153.1.S1_at--249--10591Chr02:19190672..19190696 (25 bp)
TTCTGTTGGATGTACGACCTGCACA
LOC_Os02g32460
Os.27153.1.S1_at--482--71Chr02:19190707..19190731 (25 bp)
ATTGCTTCTGTTTCTCAATCTCTGA
LOC_Os02g32460
Os.27153.1.S1_at--959--5391Chr02:19190757..19190781 (25 bp)
GAAGCTTCAGATGCTCGAGACCTCG
LOC_Os02g32460
Os.27153.1.S1_at--393--4311Chr02:19190820..19190844 (25 bp)
GCCTTCCCTTTATGTTGTTTGCCGA
LOC_Os02g32460
Os.27153.1.S1_at--578--291Chr02:19190863..19190887 (25 bp)
ATAGCCGTTCAGCTTCTACGGGAGA
LOC_Os02g32460
Os.27153.1.S1_at--43--371Chr02:19190911..19190935 (25 bp)
ATAATCGGTGGCTTGCAGTCCTGGG
LOC_Os02g32460
Os.27153.1.S1_at--866--2191Chr02:19190937..19190961 (25 bp)
ACAAGATGTAGACCCTGATTTCCCC
LOC_Os02g32460
Os.27153.1.S1_at--465--3851Chr02:19190951..19190975 (25 bp)
CTGATTTCCCCGTGTACTAGTGAAA
LOC_Os02g32460
Os.27153.1.S1_at--389--3351Chr02:19191028..19191052 (25 bp)
CACGAGATTTTTACTGGCTTGTCAT
LOC_Os02g32460
Target Sequence 
GAAGTGCCCGTGTCACTTGTAAAGAATACAAAAGGCTTGTTGATAATGGTGAACGCCATCTTCTGTTGGATGTACGACCT
GCACATCACTTCCAAATTGCTTCTGTTTCTCAATCTCTGAACATCCCGCTCTCCGAGTTGGAGGAGAAGCTTCAGATGCT
CGAGACCTCGTTGAAGGACACGACGGACGCCTCCTCATCAGACAAACCGCCTTCCCTTTATGTTGTTTGCCGAAGAGGCA
ATGACTCGCAAATAGCCGTTCAGCTTCTACGGGAGAAGGGGTTTCTTTCTGCAAAGGACATAATCGGTGGCTTGCAGTCC
TGGGCACAAGATGTAGACCCTGATTTCCCCGTGTACTAGTGAAATGGATATAGTGGTAGTCACATTTGAGATTACATGCT
CAATTTTTAAATCTGACACGAGATTTTTACTGGCTTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis