Browse Element(s) Details


Os.51245.1.S1_at

Description gb:AK062326.1
DB_XREF= gi:32972344
TID=Os.51245.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D04, full insert sequence.
FL= gb:AK062326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3245011/11expressed protein
LOC_Os01g709301/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32410OsAffx.24538.1.S1_at11/112+19156989..19157591hypothetical protein
LOC_Os02g32420OsAffx.2829.1.S1_at11/112+19160680..19162080expressed protein
LOC_Os02g32420OsAffx.2829.1.S1_x_at11/112+19160680..19162080expressed protein
LOC_Os02g32430Os.10953.1.A1_at11/112+19171915..19173974WD40 repeat protein, putative, expressed
LOC_Os02g32440NANA2+19174366..19175550expressed protein
LOC_Os02g32450Os.51245.1.S1_at11/112+19180457..19181216expressed protein
LOC_Os02g32460Os.27153.1.S1_at11/112+19186632..19191203Molybdenum cofactor synthesis protein 3, putative, expressed
LOC_Os02g32470NANA2+19197378..19197800hypothetical protein
LOC_Os02g32480OsAffx.24539.1.S1_at11/112+19205476..19206954hypothetical protein
LOC_Os02g32480Os.8008.1.S1_a_at1/112+19205476..19206954hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016491molecular_functionoxidoreductase activity
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51245.1.S1_at--1073--4751Chr02:19180940..19180964 (25 bp)
GCTGCAGGTACAGTCGTCGTCGACG
LOC_Os02g32450
Os.51245.1.S1_at--838--4711Chr02:19180859..19180883 (25 bp)
GCTGGCTCCACTTGCAACGGAGCTT
LOC_Os02g32450
Os.51245.1.S1_at--1015--1551Chr02:19180839..19180863 (25 bp)
AGCTTCAGGATAGCCCGTGGGACCT
LOC_Os02g32450
Os.51245.1.S1_at--378--9251Chr02:19180722..19180746 (25 bp)
TCCTCGGCTACCTCTAGGTGAAGTA
LOC_Os02g32450
Os.51245.1.S1_at--949--6392Chr02:19180693..19180717 (25 bp)
GATCGGTTGATTAATTAGCTAGCTA
LOC_Os02g32450
Os.51245.1.S1_at--1019--231Chr02:19180669..19180693 (25 bp)
ATATATGCGTGTTTCCATCGTCTGC
LOC_Os02g32450
Os.51245.1.S1_at--186--9231Chr02:19180656..19180680 (25 bp)
TCCATCGTCTGCCTGTAATTAAGTT
LOC_Os02g32450
Os.51245.1.S1_at--190--9591Chr02:19180594..19180618 (25 bp)
TCTTGTCCGAGCTAGCTAGTGTGCT
LOC_Os02g32450
Os.51245.1.S1_at--1025--8951Chr02:19180537..19180561 (25 bp)
TGAAATTCTCTCGTGCTGCTCAACG
LOC_Os02g32450
Os.51245.1.S1_at--24--9091Chr02:19180521..19180545 (25 bp)
TGCTCAACGTGAGAGTCCCTTGTAG
LOC_Os02g32450
Os.51245.1.S1_at--972--7231Chr02:19180507..19180531 (25 bp)
GTCCCTTGTAGGAGGCACCAATATT
LOC_Os02g32450
Target Sequence 
GCTGCAGGTACAGTCGTCGTCGACGACGACGAAGCCGGAGAAGAAGGCGGCGGCGGCGGCGGCGGCAGGAGGAAGGCGGC
CGCTGGCTCCACTTGCAACGGAGCTTCAGGATAGCCCGTGGGACCTACCGGCCGGCAGCGGCGGCGGCGCGTCACCGTCC
GACGCCGCTGGGTCTCCGGCGGCGGCGGCGGCGGCNNNTACCGTCTCCTTCGCGGACCATCTCCTCGGCTACCTCTAGGT
GAAGTACAGAGATCGGTTGATTAATTAGCTAGCTATATATGCGTGTTTCCATCGTCTGCCTGTAATTAAGTTGGATCAGG
TAATAATAAATCCGTTGGCATGATTNTATTCTTGTCCGAGCTAGCTAGTGTGCTAGTGTGTTCGATTTTTCTGCTTTTTG
TAAGCATGAAATTCTCTCGTGCTGCTCAACGTGAGAGTCCCTTGTAGGAGGCACCAATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis