Browse Element(s) Details


OsAffx.2829.1.S1_x_at

Description tigr:9630.m03071
TID=OsAffx.2829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3242011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32390OsAffx.29532.2.S1_x_at11/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.2.S1_at10/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.1.S1_x_at4/112+19136481..19138368hypothetical protein
LOC_Os02g32400OsAffx.24537.1.S1_at10/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32400Os.9470.1.S1_at1/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32410OsAffx.24538.1.S1_at11/112+19156989..19157591hypothetical protein
LOC_Os02g32420OsAffx.2829.1.S1_at11/112+19160680..19162080expressed protein
LOC_Os02g32420OsAffx.2829.1.S1_x_at11/112+19160680..19162080expressed protein
LOC_Os02g32430Os.10953.1.A1_at11/112+19171915..19173974WD40 repeat protein, putative, expressed
LOC_Os02g32440NANA2+19174366..19175550expressed protein
LOC_Os02g32450Os.51245.1.S1_at11/112+19180457..19181216expressed protein
LOC_Os02g32460Os.27153.1.S1_at11/112+19186632..19191203Molybdenum cofactor synthesis protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2829.1.S1_x_at--433--3811Chr02:19161480..19161504 (25 bp)
CTCCGTGTCGTTTTGTCTGCTCTCC
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--136--10811Chr02:19161492..19161516 (25 bp)
TTGTCTGCTCTCCTCTCTCGAATGG
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--1134--9491Chr02:19161500..19161524 (25 bp)
TCTCCTCTCTCGAATGGGCGTTTGA
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--448--4291Chr02:19161503..19161527 (25 bp)
CCTCTCTCGAATGGGCGTTTGACTC
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--438--8371Chr02:19161516..19161540 (25 bp)
GGCGTTTGACTCGATCTGCACCTAC
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--923--6851Chr02:19161519..19161543 (25 bp)
GTTTGACTCGATCTGCACCTACCTA
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--239--3851Chr02:19161531..19161555 (25 bp)
CTGCACCTACCTACAGAATGAGAGG
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--650--4291Chr02:19161540..19161564 (25 bp)
CCTACAGAATGAGAGGCTGCGCGCC
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--180--2611Chr02:19161679..19161703 (25 bp)
AACGCGGAGCTCGACGAGAGGCTCC
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--524--3891Chr02:19161733..19161757 (25 bp)
CTGGGCATCGCCAAGAGCCACGAGG
LOC_Os02g32420
OsAffx.2829.1.S1_x_at--610--1151Chr02:19161860..19161884 (25 bp)
AGTCGTGCTGCTTCGTGCAGGCGCC
LOC_Os02g32420
Target Sequence 
CTCCGTGTCGTTTTGTCTGCTCTCCTCTCTCGAATGGGCGTTTGACTCGATCTGCACCTACCTACAGAATGAGAGGCTGC
GCGCCGGGCTGGAGGAGGCGCGGCGCCGGCACCTGCGGGCGGTGGTGTCGGCGGTGGATCGCGCCGCCGCGCGGCGGCTG
CACGCCGCGGAGGCCGAGCTGGAGCGCGCCCTGGGGCGGAACGCGGAGCTCGACGAGAGGCTCCGCCAGATGGGCGCGGA
GGGGCAGGCGTGGCTGGGCATCGCCAAGAGCCACGAGGCCGCCGCCGCGGGCCTCCGCGCCACGCTCGACCAGCTCCTCC
AGTCGCCCTGCGCCGCCGCCGCCGCCGCCGCCGAGGGCGAGGGCGATGCCGAGGACGCGCAGTCGTGCTGCTTCGTGCAG
GCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2829.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis