Browse Element(s) Details


Os.9470.1.S1_at

Description gb:AK073514.1
DB_XREF= gi:32983537
TID=Os.9470.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040E14, full insert sequence.
FL= gb:AK073514.1 gb:AK060003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1103010/11plastid ribosomal protein L19 precursor, putative, expressed
LOC_Os02g324001/11plastid ribosomal protein L19 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11030Os.9470.1.S1_at10/112+5907033..5909620plastid ribosomal protein L19 precursor, putative, expressed
LOC_Os02g11040Os.12988.1.S1_at10/112+5912613..5914192expressed protein
LOC_Os02g11050Os.317.1.S1_at11/112+5918931..592365426S protease regulatory subunit 8, putative, expressed
LOC_Os02g11060Os.54034.1.S1_at11/112+5924727..5930096Serine-threonine kinase receptor-associated protein, putative, expressed
LOC_Os02g11070Os.11952.1.S1_at11/112+5930197..5933077Fatty acid elongase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9470.1.S1_at--1052--6691Chr02:5908434..5908458 (25 bp)
GTTCCTGAGAACAAGCGTCGTGAGT
LOC_Os02g11030
Os.9470.1.S1_at--158--6111Chr02:19154011..19154032 (22 bp)
GAGTCGAGTCTGTCTTTCCACTTTA
LOC_Os02g32400
Os.9470.1.S1_at--725--5571Chr02:5907337..5907361 (25 bp)
GAAATGAGACTGCTTTAGCTCCCCT
LOC_Os02g11030
Os.9470.1.S1_at--607--5111Chr02:5907252..5907276 (25 bp)
GCACATTTTGTTAGTTCCATCTCCT
LOC_Os02g11030
Os.9470.1.S1_at--574--1231Chr02:5907240..5907264 (25 bp)
AGTTCCATCTCCTAAAAGCTACTGT
LOC_Os02g11030
Os.9470.1.S1_at--57--6891Chr02:5907213..5907237 (25 bp)
GTATTTCTGATACTTGGTTCTTTCA
LOC_Os02g11030
Os.9470.1.S1_at--871--7891Chr02:5907198..5907222 (25 bp)
GGTTCTTTCAAGTACACAAGCAGTG
LOC_Os02g11030
Os.9470.1.S1_at--843--9091Chr02:5907161..5907185 (25 bp)
TGCTCCCGTGGTTCTGAATTGACAG
LOC_Os02g11030
Os.9470.1.S1_at--1032--10111Chr02:5907118..5907142 (25 bp)
TATGTTGTAACCTCTTTCTGATGAT
LOC_Os02g11030
Os.9470.1.S1_at--97--5591Chr02:5907092..5907116 (25 bp)
GAAATGACCACATATCAAGCTCCCC
LOC_Os02g11030
Os.9470.1.S1_at--1070--1571Chr02:5907075..5907099 (25 bp)
AGCTCCCCGCATTAAAGACTTGTTT
LOC_Os02g11030
Target Sequence 
GTTCCTGAGAACAAGCGTCGTGAGTCTACGTTGAAAGGCATTGTCATAGGAAGACGTAATGCTGGGATCAATACAACTTT
CAGACTGCGTAGATTAGTAGCTGGTGTTGGAGTCGAGTCTGTCTTTCCACTTTACTCTCCAAACATCAAGGAAATCAAGG
TNTNGGACAGGAAGAAAGTCAGGAGAGCAAAGTTGTATTACCTGCGGGACAGGATGAATGCACTTAAGAAATGAGACTGC
TTTAGCTCCCCTTTTATTTTTTTTTAGTTGATCTGCAAGGTTTCTTGTGACATAAAGCTTTCAGTTCAGGATGCACATTT
TGTTAGTTCCATCTCCTAAAAGCTACTGTTTGTATTTCTGATACTTGGTTCTTTCAAGTACACAAGCAGTGCAGGCAGCA
ATCTGCTCCCGTGGTTCTGAATTGACAGCGTTGATATCTTATATTTTATGTTGTAACCTCTTTCTGATGATAGAAATGAC
CACATATCAAGCTCCCCGCATTAAAGACTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis