Browse Element(s) Details


Os.12988.1.S1_at

Description gb:AK106819.1
DB_XREF= gi:32992028
TID=Os.12988.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12988 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D06, full insert sequence.
FL= gb:AK106819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1104010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11030Os.9470.1.S1_at10/112+5907033..5909620plastid ribosomal protein L19 precursor, putative, expressed
LOC_Os02g11040Os.12988.1.S1_at10/112+5912613..5914192expressed protein
LOC_Os02g11050Os.317.1.S1_at11/112+5918931..592365426S protease regulatory subunit 8, putative, expressed
LOC_Os02g11060Os.54034.1.S1_at11/112+5924727..5930096Serine-threonine kinase receptor-associated protein, putative, expressed
LOC_Os02g11070Os.11952.1.S1_at11/112+5930197..5933077Fatty acid elongase, putative, expressed
LOC_Os02g11080OsAffx.11984.1.S1_at10/112+5935644..5936940hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12988.1.S1_at--448--931Chr02:5913099..5913123 (25 bp)
AGGCAGTACGCGCTGTCGTTCACCG
LOC_Os02g11040
Os.12988.1.S1_at--1133--7411Chr02:5912919..5912943 (25 bp)
GTGTTCTTCAGCTCGTTCTACAGCA
LOC_Os02g11040
Os.12988.1.S1_at--477--9531Chr02:5912903..5912927 (25 bp)
TCTACAGCACCAGGAGCGACGACAT
LOC_Os02g11040
Os.12988.1.S1_at--453--5791Chr02:5912886..5912910 (25 bp)
GACGACATGAGCTCGCTCTGCGGGC
LOC_Os02g11040
Os.12988.1.S1_at--741--10071Chr02:5912799..5912823 (25 bp)
TAGGGTCTAGCTAGCGCCATTGCCG
LOC_Os02g11040
Os.12988.1.S1_at--1044--4311Chr02:5912783..5912807 (25 bp)
CCATTGCCGCGATGTCGTACTACTA
LOC_Os02g11040
Os.12988.1.S1_at--1011--6591Chr02:5912748..5912772 (25 bp)
GATTGTTTCGTTTGTATGTAAGACC
LOC_Os02g11040
Os.12988.1.S1_at--15--171Chr02:5912688..5912712 (25 bp)
ATTATTTTGTCGGTTCCTGGTATAT
LOC_Os02g11040
Os.12988.1.S1_at--416--5211Chr02:5912659..5912683 (25 bp)
GAATTTTGCAGTTTAAGCATGCGTT
LOC_Os02g11040
Os.12988.1.S1_at--981--4971Chr02:5912643..5912667 (25 bp)
GCATGCGTTAGAAAATCAGTTCGAC
LOC_Os02g11040
Os.12988.1.S1_at--315--3091Chr02:5912613..5912637 (25 bp)
AATAATACAATATTTCGTGCTCTCG
NONE
Target Sequence 
AGGCAGTACGCGCTGTCGTTCACCGTCGGCGACGCCAGCAACGGCTGCGAGGGGTCGCTGGTGGTGGAGGCGTACGCCGG
GAGGGAGTCCACCAGGGTGGCGCACGAGTCGGCTGGCCGCGGCGGCGCCGCCAAGNCGCGCCGTGCTGCCGTTCCGCGCC
GCCGCGGCGCGNNCACCCGCGTCGTGTTCTTCAGCTCGTTCTACAGCACCAGGAGCGACGACATGAGCTCGCTCTGCGGG
CCGGTGATCGACGACGTCGCCGTCGTCAGCGTGCGCGCGCGGCGGCCGGCGGCGAAGCGCGGCTAGGGTCTAGCTAGCGC
CATTGCCGCGATGTCGTACTACTANTTAGTTGTTGATTGTTTCGTTTGTATGTAAGACCAAGAAATTGGTCGATCGAGAA
TATATATAATTATTATTATTTTGTCGGTTCCTGGTATATATTTGAATTTTGCAGTTTAAGCATGCGTTAGAAAATCAGTT
CGACTGAATAATAATACAATATTTCGTGCTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis