Browse Element(s) Details


OsAffx.11984.1.S1_at

Description tigr:9630.m01036
TID=OsAffx.11984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1108010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11040Os.12988.1.S1_at10/112+5912613..5914192expressed protein
LOC_Os02g11050Os.317.1.S1_at11/112+5918931..592365426S protease regulatory subunit 8, putative, expressed
LOC_Os02g11060Os.54034.1.S1_at11/112+5924727..5930096Serine-threonine kinase receptor-associated protein, putative, expressed
LOC_Os02g11070Os.11952.1.S1_at11/112+5930197..5933077Fatty acid elongase, putative, expressed
LOC_Os02g11080OsAffx.11984.1.S1_at10/112+5935644..5936940hypothetical protein
LOC_Os02g11090OsAffx.3761.1.S1_x_at1/112+5943967..5946323hypothetical protein
LOC_Os02g11100OsAffx.11986.1.S1_at11/112+5952319..5952699hypothetical protein
LOC_Os02g11110Os.8044.1.S1_at11/112+5955000..5957276Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11110Os.8044.2.S1_at11/112+5955000..5957276Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11110Os.8044.1.S1_x_at11/112+5955000..5957276Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11984.1.S1_at--216--7971Chr02:5935678..5935702 (25 bp)
GGATCTACCGACGACATCGACATAT
LOC_Os02g11080
OsAffx.11984.1.S1_at--969--5651Chr02:5935690..5935714 (25 bp)
GACATCGACATATGGGCATTGCCGT
LOC_Os02g11080
OsAffx.11984.1.S1_at--589--5671Chr02:5935696..5935720 (25 bp)
GACATATGGGCATTGCCGTCGACGA
LOC_Os02g11080
OsAffx.11984.1.S1_at--135--971Chr02:5935754..5935778 (25 bp)
AGGACGACTTCCTCAGTGTGCTGCG
LOC_Os02g11080
OsAffx.11984.1.S1_at--184--3471Chr02:5935767..5935791 (25 bp)
CAGTGTGCTGCGAGCACTACGCAAT
LOC_Os02g11080
OsAffx.11984.1.S1_at--304--5951Chr02:5935778..5935802 (25 bp)
GAGCACTACGCAATGCCGCACGAAG
LOC_Os02g11080
OsAffx.11984.1.S1_at--263--3351Chr02:5935796..5935820 (25 bp)
CACGAAGGGTGGAGGCCGCTGCCGC
LOC_Os02g11080
OsAffx.11984.1.S1_at--717--9171Chr02:5935815..5935839 (25 bp)
TGCCGCTGGGCGACTGTGACGATGA
LOC_Os02g11080
OsAffx.11984.1.S1_at--263--8691Chr02:5935829..5935853 (25 bp)
TGTGACGATGAAGGCCCCGCGTATC
LOC_Os02g11080
OsAffx.11984.1.S1_at--726--2951Chr02:5935839..5935862 (24 bp)
AAGGCCCCGCGTATCACGCGCTTGA
LOC_Os02g11080
OsAffx.11984.1.S1_at--642--4551NONE
GCGCTTGACGGAGAAAGTACATATT
NONE
Target Sequence 
GGATCTACCGACGACATCGACATATGGGCATTGCCGTCGACGAGTTCATCGCTGCCGCCGACACGTTGGGAGGAGGAGGA
CGACTTCCTCAGTGTGCTGCGAGCACTACGCAATGCCGCACGAAGGGTGGAGGCCGCTGCCGCTGGGCGACTGTGACGAT
GAAGGCCCCGCGTATCACGCGCTTGACGGAGAAAGTACATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis