Browse Element(s) Details


OsAffx.11986.1.S1_at

Description tigr:9630.m01039
TID=OsAffx.11986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1110011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11060Os.54034.1.S1_at11/112+5924727..5930096Serine-threonine kinase receptor-associated protein, putative, expressed
LOC_Os02g11070Os.11952.1.S1_at11/112+5930197..5933077Fatty acid elongase, putative, expressed
LOC_Os02g11080OsAffx.11984.1.S1_at10/112+5935644..5936940hypothetical protein
LOC_Os02g11090OsAffx.3761.1.S1_x_at1/112+5943967..5946323hypothetical protein
LOC_Os02g11100OsAffx.11986.1.S1_at11/112+5952319..5952699hypothetical protein
LOC_Os02g11110Os.8044.1.S1_at11/112+5955000..5957276Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11110Os.8044.2.S1_at11/112+5955000..5957276Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11110Os.8044.1.S1_x_at11/112+5955000..5957276Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11120Os.40360.1.S1_x_at1/112+5962254..5963919hypothetical protein
LOC_Os02g11130Os.8044.1.S1_x_at3/112+5966053..5967636Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11636NANA2+5970553..5971719transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11986.1.S1_at--50--8911Chr02:5952369..5952393 (25 bp)
TGAGAACCCTTGGAAAGTGCCACGG
LOC_Os02g11100
OsAffx.11986.1.S1_at--1010--3971Chr02:5952472..5952496 (25 bp)
CGGGCGTTCGTCAGGCTCCATGTGA
LOC_Os02g11100
OsAffx.11986.1.S1_at--181--10611Chr02:5952478..5952502 (25 bp)
TTCGTCAGGCTCCATGTGATGATCT
LOC_Os02g11100
OsAffx.11986.1.S1_at--1116--3491Chr02:5952490..5952514 (25 bp)
CATGTGATGATCTGCGAAGCTCTGC
LOC_Os02g11100
OsAffx.11986.1.S1_at--648--4591Chr02:5952503..5952527 (25 bp)
GCGAAGCTCTGCAGTTCAAGGTGAT
LOC_Os02g11100
OsAffx.11986.1.S1_at--1019--4791Chr02:5952508..5952532 (25 bp)
GCTCTGCAGTTCAAGGTGATTTGGA
LOC_Os02g11100
OsAffx.11986.1.S1_at--962--6171Chr02:5952562..5952586 (25 bp)
GAGGAGAGCTTTAGATCAAGCAGAA
LOC_Os02g11100
OsAffx.11986.1.S1_at--84--9511Chr02:5952609..5952633 (25 bp)
TCTCCCATGCCCTAGTGAGGTGGCA
LOC_Os02g11100
OsAffx.11986.1.S1_at--520--9151Chr02:5952616..5952640 (25 bp)
TGCCCTAGTGAGGTGGCAGCGAAAT
LOC_Os02g11100
OsAffx.11986.1.S1_at--64--4111Chr02:5952635..5952659 (25 bp)
CGAAATGGATTTCGCCATTGGCTAG
LOC_Os02g11100
OsAffx.11986.1.S1_at--202--10651Chr02:5952645..5952669 (25 bp)
TTCGCCATTGGCTAGATCCAGACAG
LOC_Os02g11100
Target Sequence 
TGAGAACCCTTGGAAAGTGCCACGGGGGAAGCAATCCGCCATGGAGGCCGTCGTGATGCTGGCGAGCTACGACGCCGCCA
AGACCACCGTGGAAGAACTCCGGCGGGCGTTCGTCAGGCTCCATGTGATGATCTGCGAAGCTCTGCAGTTCAAGGTGATT
TGGAAGGTGTTCAGGGCACGAGGGCGGTGGGAGGAGGAGAGCTTTAGATCAAGCAGAATATATGGTTCATTGGGGACAGC
TCTCCCATGCCCTAGTGAGGTGGCAGCGAAATGGATTTCGCCATTGGCTAGATCCAGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis