Browse Element(s) Details


Os.11952.1.S1_at

Description gb:AK067907.1
DB_XREF= gi:32977925
TID=Os.11952.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127I02, full insert sequence.
FL= gb:AK067907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1107011/11Fatty acid elongase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11030Os.9470.1.S1_at10/112+5907033..5909620plastid ribosomal protein L19 precursor, putative, expressed
LOC_Os02g11040Os.12988.1.S1_at10/112+5912613..5914192expressed protein
LOC_Os02g11050Os.317.1.S1_at11/112+5918931..592365426S protease regulatory subunit 8, putative, expressed
LOC_Os02g11060Os.54034.1.S1_at11/112+5924727..5930096Serine-threonine kinase receptor-associated protein, putative, expressed
LOC_Os02g11070Os.11952.1.S1_at11/112+5930197..5933077Fatty acid elongase, putative, expressed
LOC_Os02g11080OsAffx.11984.1.S1_at10/112+5935644..5936940hypothetical protein
LOC_Os02g11090OsAffx.3761.1.S1_x_at1/112+5943967..5946323hypothetical protein
LOC_Os02g11100OsAffx.11986.1.S1_at11/112+5952319..5952699hypothetical protein
LOC_Os02g11110Os.8044.1.S1_at11/112+5955000..5957276Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11110Os.8044.2.S1_at11/112+5955000..5957276Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11110Os.8044.1.S1_x_at11/112+5955000..5957276Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0042335biological_processcuticle biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11952.1.S1_at--284--7991Chr02:5930589..5930613 (25 bp)
GGATGAGATCGATCGGTTCCCCGTG
LOC_Os02g11070
Os.11952.1.S1_at--417--6711Chr02:5930561..5930585 (25 bp)
GTTCCCAGGGTGTCCAGGATTTCAA
LOC_Os02g11070
Os.11952.1.S1_at--1133--4331Chr02:5930548..5930572 (25 bp)
CCAGGATTTCAACCGACTGAGCTTG
LOC_Os02g11070
Os.11952.1.S1_at--959--3111Chr02:5930515..5930539 (25 bp)
AATTTGGTGCTCCTTTGGAATTGGC
LOC_Os02g11070
Os.11952.1.S1_at--1122--8211Chr02:5930493..5930517 (25 bp)
GGCACTTTTGTTAGGTGGATGCACC
LOC_Os02g11070
Os.11952.1.S1_at--779--51Chr02:5930455..5930479 (25 bp)
ATTGTTGGGTTTTGTGGTACTTGCA
LOC_Os02g11070
Os.11952.1.S1_at--8--8731Chr02:5930375..5930399 (25 bp)
TGTCTGTCTTGTGGTTGTACGTTCA
LOC_Os02g11070
Os.11952.1.S1_at--926--6971Chr02:5930359..5930383 (25 bp)
GTACGTTCACCACTTCAGCTTGGGT
LOC_Os02g11070
Os.11952.1.S1_at--460--7471Chr02:5930334..5930358 (25 bp)
GTGTGATCAGTCCTCCAAATTTTCT
LOC_Os02g11070
Os.11952.1.S1_at--899--10811Chr02:5930294..5930318 (25 bp)
TTGGCGAATTTTGATTGGACGACAT
LOC_Os02g11070
Os.11952.1.S1_at--655--8111Chr02:5930278..5930302 (25 bp)
GGACGACATCTTTTGTGTTTCTTAT
LOC_Os02g11070
Target Sequence 
GGATGAGATCGATCGGTTCCCCGTGGTTGTTCCCAGGGTGTCCAGGATTTCAACCGACTGAGCTTGAATAGATTAATTTG
GTGCTCCTTTGGAATTGGCACTTTTGTTAGGTGGATGCACCAAGGTGATTACGGATTGTTGGGTTTTGTGGTACTTGCAA
ATTGTTTTTGATCTTTTAATCTATTGTTAGGGTAGGAACAGGAGTGTGTTGTTGTGTCTGTCTTGTGGTTGTACGTTCAC
CACTTCAGCTTGGGTGTGTGATCAGTCCTCCAAATTTTCTGATTATGGACCAAATTTGGCGAATTTTGATTGGACGACAT
CTTTTGTGTTTCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis