Browse Element(s) Details


OsAffx.24537.1.S1_at

Description tigr:9630.m03069
TID=OsAffx.24537.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L19, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3240010/11plastid ribosomal protein L19 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32390OsAffx.29532.2.S1_x_at11/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.2.S1_at10/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.1.S1_x_at4/112+19136481..19138368hypothetical protein
LOC_Os02g32400OsAffx.24537.1.S1_at10/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32400Os.9470.1.S1_at1/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32410OsAffx.24538.1.S1_at11/112+19156989..19157591hypothetical protein
LOC_Os02g32420OsAffx.2829.1.S1_at11/112+19160680..19162080expressed protein
LOC_Os02g32420OsAffx.2829.1.S1_x_at11/112+19160680..19162080expressed protein
LOC_Os02g32430Os.10953.1.A1_at11/112+19171915..19173974WD40 repeat protein, putative, expressed
LOC_Os02g32440NANA2+19174366..19175550expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24537.1.S1_at--468--8491Chr02:19152004..19152028 (25 bp)
TGGCTCCGCCGCGAAACTGTTGAGC
LOC_Os02g32400
OsAffx.24537.1.S1_at--813--8811Chr02:19152021..19152045 (25 bp)
TGTTGAGCTCTGCAGCCTCTGAAAT
LOC_Os02g32400
OsAffx.24537.1.S1_at--362--5591Chr02:19152041..19152065 (25 bp)
GAAATCGCGCAGTCGGGCGCTAAGA
LOC_Os02g32400
OsAffx.24537.1.S1_at--892--2391Chr02:19153092..19153116 (25 bp)
AAACTTGCTCTCAAGAGGCCTGACA
LOC_Os02g32400
OsAffx.24537.1.S1_at--829--5611Chr02:19153113..19153137 (25 bp)
GACAAGACGGCTATGCACGCTAGAG
LOC_Os02g32400
OsAffx.24537.1.S1_at--686--3631Chr02:19153401..19153425 (25 bp)
CTTGCTCTAAGATGGCTAAATGCTG
LOC_Os02g32400
OsAffx.24537.1.S1_at--241--5531Chr02:19153457..19153744 (25 bp)
GAAACAGGCTATCTTGAACATGGAG
LOC_Os02g32400
OsAffx.24537.1.S1_at--946--811Chr02:19153739..19153763 (25 bp)
ATGGAGGCAGCTGACAAGGTACTTG
LOC_Os02g32400
OsAffx.24537.1.S1_at--1154--5151Chr02:19153898..19153922 (25 bp)
GCAAGTTCCTGAGAAGAAGCGGCGC
LOC_Os02g32400
OsAffx.24537.1.S1_at--5--5411Chr02:19153913..19153937 (25 bp)
GAAGCGGCGCGAGTCTACGTTGAAA
LOC_Os02g32400
OsAffx.24537.1.S1_at--648--7751NONE
GGTGTTGGAGTCGATTACTCTCCAA
NONE
Target Sequence 
TGGCTCCGCCGCGAAACTGTTGAGCTCTGCAGCCTCTGAAATCGCGCAGTCGGGCGCTAAGAATGAATTGGAGCCAACAG
TTGGCTATACTATTAAACTTGCTCTCAAGAGGCCTGACAAGACGGCTATGCACGCTAGAGCAAGTATAATAGAGAGCTGT
AACTGTAAGAGCAGATTGACTATATATGAATTGGAGCTAGTAGTGGGCTATACTATTAAACTTGCTCTAAGATGGCTAAA
TGCTGAGGTGGATGAGAGAGGAGAGGAAAGAGATGAGAAACAGGCTATCTTGAACATGGAGGCAGCTGACAAGGTACTTG
GGGAAAGAGAGATTCCTGATGTGCAGCCTGGATGTATTCTCCAAATGAGACTGCAAGTTCCTGAGAAGAAGCGGCGCGAG
TCTACGTTGAAAGGCATTGTCATAGCAAGACGCAATGCTGGGATCAATACAACTTTCAGACTGCGTAGATTAGTAGCTGG
TGTTGGAGTCGATTACTCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis