Browse Element(s) Details


OsAffx.24539.1.S1_at

Description tigr:9630.m03077
TID=OsAffx.24539.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3248011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32450Os.51245.1.S1_at11/112+19180457..19181216expressed protein
LOC_Os02g32460Os.27153.1.S1_at11/112+19186632..19191203Molybdenum cofactor synthesis protein 3, putative, expressed
LOC_Os02g32470NANA2+19197378..19197800hypothetical protein
LOC_Os02g32480OsAffx.24539.1.S1_at11/112+19205476..19206954hypothetical protein
LOC_Os02g32480Os.8008.1.S1_a_at1/112+19205476..19206954hypothetical protein
LOC_Os02g32490Os.8565.1.S1_at11/112+19213179..19219140Acetyl-coenzyme A synthetase, putative, expressed
LOC_Os02g32504Os.34481.1.A1_at11/112+19219510..19229756expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24539.1.S1_at--124--9751Chr02:19205795..19205819 (25 bp)
TAATTGGTGCTTCCTTGGTGGCGCA
LOC_Os02g32480
OsAffx.24539.1.S1_at--339--1471Chr02:19205977..19206001 (25 bp)
AGAATGACGGACGACCGCTCGACTA
LOC_Os02g32480
OsAffx.24539.1.S1_at--806--11Chr02:19206014..19206038 (25 bp)
ATTGGGACGACGTGGCAAGCACCTC
LOC_Os02g32480
OsAffx.24539.1.S1_at--804--5431Chr02:19206090..19206114 (25 bp)
GAACCTGTTGTTCCACGAGCTTTGG
LOC_Os02g32480
OsAffx.24539.1.S1_at--384--10811Chr02:19206117..19206141 (25 bp)
TTGTAGCTTCCGTGATAGCTGCCTA
LOC_Os02g32480
OsAffx.24539.1.S1_at--151--8531Chr02:19206158..19206182 (25 bp)
TGGACACCTTCTTAATGATCACGCC
LOC_Os02g32480
OsAffx.24539.1.S1_at--750--7651Chr02:19206197..19206221 (25 bp)
GGGAGTGTCTCCTGATGACTACTCT
LOC_Os02g32480
OsAffx.24539.1.S1_at--128--8951Chr02:19206212..19206236 (25 bp)
TGACTACTCTCATGACGCGCAAAGG
LOC_Os02g32480
OsAffx.24539.1.S1_at--910--2531Chr02:19206792..19206869 (25 bp)
AACTCATTGTTACGTCGCTCCGGAG
LOC_Os02g32480
OsAffx.24539.1.S1_at--193--7171Chr02:19206869..19206893 (25 bp)
GTCTGCTTCCGATCGAGGGTCACAA
LOC_Os02g32480
OsAffx.24539.1.S1_at--309--1331Chr02:19206900..19206924 (25 bp)
AGAGTATTGCGGCTTTTACCGGCAG
LOC_Os02g32480
Target Sequence 
TAATTGGTGCTTCCTTGGTGGCGCACTGCAACCTCGCCAGGTCACCTGCATCGTGCTTGCAGCCAAGAGAATGACGGACG
ACCGCTCGACTACGCCACCAATGTATTGGGACGACGTGGCAAGCACCTCGTCAAGCTCCCATCCTGTCGCGCCCTACTCA
AGCTCCTCCGTCATCGGCGAGAACCTGTTGTTCCACGAGCTTTGGGTTTGTAGCTTCCGTGATAGCTGCCTATGGAGAGC
AATGTCATTGGACACCTTCTTAATGATCACGCCCTTTGGTCCGACGGGGGAGTGTCTCCTGATGACTACTCTCATGACGC
GCAAAGGAGTCAGGTGCAGAAGCGGCAATGCTGAACTAGGACAAATTACTGATTGCCAAATAACAGTACAACTCATTGTT
ACGTCGCTCCGGAGTCTGCTTCCGATCGAGGGTCACAAGCAGGAAGAGTATTGCGGCTTTTACCGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis