Browse Element(s) Details


Os.8592.1.S1_at

Description gb:AK101471.1
DB_XREF= gi:32986680
TID=Os.8592.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.8592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040K14, full insert sequence.
FL= gb:AK101471.1 gb:AK061508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3378011/11OTU-like cysteine protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33750Os.12220.1.S1_at11/114+20245097..2024836640S ribosomal protein S14, putative, expressed
LOC_Os04g33760Os.53796.1.S1_at11/114+20255902..20257262expressed protein
LOC_Os04g33770OsAffx.26312.1.S1_at11/114+20259479..20265096hypothetical protein
LOC_Os04g33780Os.8592.1.S1_at11/114+20270572..20275725OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g33790OsAffx.14117.1.S1_at10/114+20278820..20281888hypothetical protein
LOC_Os04g33800NANA4+20283019..20287460retrotransposon protein, putative, unclassified
LOC_Os04g33810OsAffx.14118.1.S1_at10/114+20296817..20297859RNA recognition motif family protein, expressed
LOC_Os04g33820Os.6314.1.S1_at7/114+20298484..20299680F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8592.1.S1_at--982--6591Chr04:20274742..20274895 (25 bp)
GATTGAGAATGCACTTCTGGCTGAA
LOC_Os04g33780
Os.8592.1.S1_at--100--4751Chr04:20274890..20274914 (25 bp)
GCTGAAGGACGACTATACTCTGATT
LOC_Os04g33780
Os.8592.1.S1_at--268--10571Chr04:20275036..20275155 (25 bp)
TTCTTCTGCTGCGATTAGTGGGTCT
LOC_Os04g33780
Os.8592.1.S1_at--364--151Chr04:20275145..20275168 (24 bp)
ATTAGTGGGTCTTCTCGGTCAGCTG
LOC_Os04g33780
Os.8592.1.S1_at--648--1251Chr04:20275182..20275206 (25 bp)
AGTTGGCGAGGAGTGCTTCGTTCTC
LOC_Os04g33780
Os.8592.1.S1_at--224--8231Chr04:20275245..20275269 (25 bp)
GGCAATGGGCTTCAACTACATCCAG
LOC_Os04g33780
Os.8592.1.S1_at--1052--6151Chr04:20275297..20275321 (25 bp)
GAGGACGTCGACTCAATGATCTACT
LOC_Os04g33780
Os.8592.1.S1_at--729--9731Chr04:20275309..20275333 (25 bp)
TCAATGATCTACTACCTTGTGGAGA
LOC_Os04g33780
Os.8592.1.S1_at--571--3951Chr04:20275344..20275368 (25 bp)
CGGAGCCTCTGCAGGTGGTAGCAAT
LOC_Os04g33780
Os.8592.1.S1_at--11--1611Chr04:20275383..20275407 (25 bp)
AGCTGCTGAGTGATCTGTGTACCTT
LOC_Os04g33780
Os.8592.1.S1_at--127--7431Chr04:20275399..20275423 (25 bp)
GTGTACCTTTCACCGGCTATGACGA
LOC_Os04g33780
Target Sequence 
GATTGAGAATGCACTTCTGGCTGAAGGACGACTATACTCTGATTTGGAGTTGACAGAGAAGGAAATAGAGCGGATGGTGA
TGGAGGCCTCACNGAGCAGAGTATCTAAAGCAGCAGCAACAACAACTTAACTTCAGAGAGTCATCAACATCAGGGGCAGA
GCCATCTTCTTCTGCTGCGATTAGTGGGTCTTCTCGGTCAGCTGGGACTGCCGATAGAGTTGGCGAGGAGTGCTTCGTTC
TCCCGGACACCGTGCTAACCCGCAGCATGCAGCTCCTCCTGGCAATGGGCTTCAACTACATCCAGGTCATGGAAGCCTAT
AGCATATTTGGCGAGGACGTCGACTCAATGATCTACTACCTTGTGGAGATGGGAGGCACCGGAGCCTCTGCAGGTGGTAG
CAATCGCAGGAAAGGAAAAGCTGCTGAGTGATCTGTGTACCTTTCACCGGCTATGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis